View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9469_low_6 (Length: 432)
Name: NF9469_low_6
Description: NF9469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9469_low_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 20 - 417
Target Start/End: Complemental strand, 55696941 - 55696544
Alignment:
| Q |
20 |
attttaacagtctgtttgaaaaaacttggcagatagtggggagaatgacagctgaagaaaagaaggttcttcttttcttttggacgtctgtgaaatattt |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55696941 |
attttaacagtctgtttgaaaaaacttggcagatagtggggagaatgacagctgaagaaaagaaggttcttcttttcttttggacgtctgtgaaatattt |
55696842 |
T |
|
| Q |
120 |
accagttgaaggctttcgtggtttgggttcccgtctccacatttacaagtcccatgaatctggggatcgttttccttcatctcatacatgcttttgtcgg |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |||||||||||||||||||||||| |||| |
|
|
| T |
55696841 |
accagttgaaggctttcgtggtttgggttcccgtctccacatttacaagtcccatgaatccggtgatcgtcttccttcatctcatacatgcttttatcgg |
55696742 |
T |
|
| Q |
220 |
ctgtgtttcccagcttattcatctatgcctgtcatgcaagctcgacttaaagtcattacccaagaacatattggctctagttttggtacttggtgaacat |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55696741 |
ctgtgtttcccagcttattcatctatgcctgtcatgcaagctcgtcttaaagtcattacccaagaacatattggctctagttttggtacttggtgaacat |
55696642 |
T |
|
| Q |
320 |
acctgcaatctggaaagaaactggttttgatttgactgcacatagaattattgttctgcagctttgtacagactataggagcatcccatctgatgtcc |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
55696641 |
acctgcaatctggaaagaaactggttttgatttgactgcacatagaattatcgttctgcagctttgtacagactataggagcatcccatctgttgtcc |
55696544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 5e-23; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 39 - 150
Target Start/End: Complemental strand, 9235337 - 9235226
Alignment:
| Q |
39 |
aaaaacttggcagatagtggggagaatgacagctgaagaaaagaaggttcttcttttcttttggacgtctgtgaaatatttaccagttgaaggctttcgt |
138 |
Q |
| |
|
||||||||||||||| || ||||||||| |||| || ||||||| |||||||| ||||||||||| ||||||||| |||||||||||||||| || ||| |
|
|
| T |
9235337 |
aaaaacttggcagatcgtcgggagaatgtcagcagagcaaaagaaagttcttctgttcttttggacatctgtgaaacatttaccagttgaaggtttccgt |
9235238 |
T |
|
| Q |
139 |
ggtttgggttcc |
150 |
Q |
| |
|
|| ||| ||||| |
|
|
| T |
9235237 |
ggcttgagttcc |
9235226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 41 - 131
Target Start/End: Complemental strand, 9246920 - 9246830
Alignment:
| Q |
41 |
aaacttggcagatagtggggagaatgacagctgaagaaaagaaggttcttcttttcttttggacgtctgtgaaatatttaccagttgaagg |
131 |
Q |
| |
|
||||||||||||| || ||||||||| |||| || |||||||||||||||| ||||| ||||| ||||||||| |||||||||||||||| |
|
|
| T |
9246920 |
aaacttggcagatcgttgggagaatgccagcagagcaaaagaaggttcttctgttcttctggacatctgtgaaacatttaccagttgaagg |
9246830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 38 - 145
Target Start/End: Complemental strand, 9255080 - 9254973
Alignment:
| Q |
38 |
aaaaaacttggcagatagtggggagaatgacagctgaagaaaagaaggttcttcttttcttttggacgtctgtgaaatatttaccagttgaaggctttcg |
137 |
Q |
| |
|
|||||||||||||||| || || |||||| |||| || ||| |||||||||||| ||||||||||| ||||||||| ||||||||||| |||| || | |
|
|
| T |
9255080 |
aaaaaacttggcagatcgttggaagaatgtcagcagagcaaaggaaggttcttctgttcttttggacatctgtgaaacatttaccagttaaaggtttcca |
9254981 |
T |
|
| Q |
138 |
tggtttgg |
145 |
Q |
| |
|
|||||||| |
|
|
| T |
9254980 |
tggtttgg |
9254973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 77 - 131
Target Start/End: Complemental strand, 9265047 - 9264993
Alignment:
| Q |
77 |
aaaagaaggttcttcttttcttttggacgtctgtgaaatatttaccagttgaagg |
131 |
Q |
| |
|
|||||||||||||||| ||||||||||| || |||||| |||||||||| ||||| |
|
|
| T |
9265047 |
aaaagaaggttcttctgttcttttggacatcagtgaaacatttaccagtcgaagg |
9264993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University