View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9470_high_11 (Length: 229)
Name: NF9470_high_11
Description: NF9470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9470_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 2 - 224
Target Start/End: Original strand, 51145651 - 51145873
Alignment:
| Q |
2 |
acttgtagcattaaggagaatattgcatatggcaaggactgtgcaactgatgaagaaatcagagttgcagcagaacttgctaatgctgccaaatttatag |
101 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
51145651 |
acttgtagcattaaggagaatattgcatatggcaaggactgtgcaactgatgaagaaatcagagttgcagcagaacttgctaatgctgctaaatttatag |
51145750 |
T |
|
| Q |
102 |
ataaacttcctcaggtgaaatctcaaatcttcatttaaaaacaaactgcttaatgaatccctgctttacatttgaaatattaatttccttcatttgaatg |
201 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
51145751 |
ataaacttcctcaggtgaaatctcaaatcttcatttaaaaagaaactgcttaatgaattcctgctttacatttgaaatattaatttccttcatttgaatg |
51145850 |
T |
|
| Q |
202 |
gattatttctatctgcctagtgt |
224 |
Q |
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|||||||||||| |||||||||| |
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| T |
51145851 |
gattatttctatttgcctagtgt |
51145873 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 2 - 179
Target Start/End: Original strand, 51156792 - 51156969
Alignment:
| Q |
2 |
acttgtagcattaaggagaatattgcatatggcaaggactgtgcaactgatgaagaaatcagagttgcagcagaacttgctaatgctgccaaatttatag |
101 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |
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| T |
51156792 |
acttgtagcattaaggagaatattgcatatggcaaggactgtgcaactgatgaagaaatcagagttgcagcagaacttggtaacgctgccaaatttatag |
51156891 |
T |
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| Q |
102 |
ataaacttcctcaggtgaaatctcaaatcttcatttaaaaacaaactgcttaatgaatccctgctttacatttgaaat |
179 |
Q |
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| T |
51156892 |
ataaacttcctcaggtgaactttcaaatcttcatttaaaaagaaacttcttgatgaattcctactttacaattgaaat |
51156969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 2 - 120
Target Start/End: Original strand, 51199640 - 51199758
Alignment:
| Q |
2 |
acttgtagcattaaggagaatattgcatatggcaaggactgtgcaactgatgaagaaatcagagttgcagcagaacttgctaatgctgccaaatttatag |
101 |
Q |
| |
|
||||| |||||||| ||||| ||||||||||||||||| |||| ||||||||||||||||||| |||||| || ||||||||||||||||||||||||| |
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| T |
51199640 |
acttgcagcattaaagagaacattgcatatggcaaggatggtgctactgatgaagaaatcagagctgcagccgagcttgctaatgctgccaaatttatag |
51199739 |
T |
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| Q |
102 |
ataaacttcctcaggtgaa |
120 |
Q |
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||||||||||||||||||| |
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| T |
51199740 |
ataaacttcctcaggtgaa |
51199758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 2 - 132
Target Start/End: Complemental strand, 29937277 - 29937147
Alignment:
| Q |
2 |
acttgtagcattaaggagaatattgcatatggcaaggactgtgcaactgatgaagaaatcagagttgcagcagaacttgctaatgctgccaaatttatag |
101 |
Q |
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|
||||||||||||||| |||||||| | ||||||||||| | ||||||| ||| ||||| |||| |||||| |||||||||||||||||||||||||||| |
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| T |
29937277 |
acttgtagcattaagaagaatatttcctatggcaaggatggggcaactgttgaggaaataagagctgcagcggaacttgctaatgctgccaaatttatag |
29937178 |
T |
|
| Q |
102 |
ataaacttcctcaggtgaaatctcaaatctt |
132 |
Q |
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| T |
29937177 |
acaaactccctcaggtgaattctcaaatctt |
29937147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 2 - 113
Target Start/End: Original strand, 51212786 - 51212897
Alignment:
| Q |
2 |
acttgtagcattaaggagaatattgcatatggcaaggactgtgcaactgatgaagaaatcagagttgcagcagaacttgctaatgctgccaaatttatag |
101 |
Q |
| |
|
|||||||||||||| ||||| ||||| ||||| ||||| ||||| |||||||||||| ||| |||||||||||||||||||||||| || || || | |
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| T |
51212786 |
acttgtagcattaaagagaacattgcctatggtaaggatgcggcaaccgatgaagaaatccgagctgcagcagaacttgctaatgctgctaacttcatcg |
51212885 |
T |
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| Q |
102 |
ataaacttcctc |
113 |
Q |
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||||| |||||| |
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| T |
51212886 |
ataaatttcctc |
51212897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 90
Target Start/End: Complemental strand, 49737228 - 49737140
Alignment:
| Q |
2 |
acttgtagcattaaggagaatattgcatatggcaaggactgtgcaactgatgaagaaatcagagttgcagcagaacttgctaatgctgc |
90 |
Q |
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|||||||||||||| ||||| ||||| ||||| ||||| | ||||| |||||||||||||||| |||| ||||||| ||||| ||||| |
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| T |
49737228 |
acttgtagcattaaagagaacattgcctatggtaaggatggagcaacagatgaagaaatcagagctgcaacagaactagctaaagctgc |
49737140 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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