View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9470_high_2 (Length: 414)
Name: NF9470_high_2
Description: NF9470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9470_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 394; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 1 - 398
Target Start/End: Complemental strand, 47920285 - 47919888
Alignment:
| Q |
1 |
cgccggagatagtcaaattagatgagacactttcctaacattcttccctttacatacctcattaaaaagtagaaaattatcaatcaattcgtctccctac |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
47920285 |
cgccggagatagtcaaattagatgagacactttcctaacattcttccctttacatacctcattaaaaagtagaaaattatcaatcaatttgtctccctac |
47920186 |
T |
|
| Q |
101 |
ttcgttgtgttcccatccaagtactgagcagcttgcagtaaatgattggcagttacgatttttctaaaacacaatacacaacattgttggtgcatatctt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47920185 |
ttcgttgtgttcccatccaagtactgagcagcttgcagtaaatgattggcagttacgatttttctaaaacacaatacacaacattgttggtgcatatctt |
47920086 |
T |
|
| Q |
201 |
gaattattttccataatttcagccgagttgataatttgtcttgaagtaatcttcatccgaacattattattttagatggtactgtagttttccacatcct |
300 |
Q |
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| T |
47920085 |
gaattattttccataatttcagccgagttgataatttgtcttgaagtaatcttcatccgaacattattattttagatggtactgtagttttccacatcct |
47919986 |
T |
|
| Q |
301 |
ctgcttcgccgagatgaattcatcttcgtaactattgcgagtttagaatttatctgctcctgataacagcctttgaccgaaaaactgttggtactatt |
398 |
Q |
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| T |
47919985 |
ctgcttcgccgagatgaattcatcttcgtaactattgcgagtttagaatttatctgctcctgataacagcctttgaccgaaaaactgttggtactatt |
47919888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 167 - 390
Target Start/End: Complemental strand, 47926376 - 47926150
Alignment:
| Q |
167 |
aaacacaatacacaacattgttggtgcatatcttgaatta------ttttccataatttcagccgagttgataatttgtcttgaagtaatcttcatccga |
260 |
Q |
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| T |
47926376 |
aaacacaatacacaacattgttagtgcatatcttgaattacacatcttttccatactttcacccgagtttataatctgtcttcaagtaatctccatctga |
47926277 |
T |
|
| Q |
261 |
acattattattttagatggtactgtagttttccacatcctctgcttcgccgagatgaattcatcttcgtaactattgcgagttt-agaatttatctgctc |
359 |
Q |
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| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| || |||| ||||||||||| ||||||||| ||||| |
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| T |
47926276 |
a----attattttagatggtactgtagttttccagatcctctgcttcgctgagatgaattcatcgtcataaccattgcgagtttgagaatttatatgctc |
47926181 |
T |
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| Q |
360 |
ctgataacagcctttgaccgaaaaactgttg |
390 |
Q |
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||||||||| | |||||| ||||||||||| |
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| T |
47926180 |
ttgataacagtcattgaccaaaaaactgttg |
47926150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 10 - 88
Target Start/End: Original strand, 589444 - 589522
Alignment:
| Q |
10 |
tagtcaaattagatgagacactttcctaacattcttccctttacatacctcattaaaaagtagaaaattatcaatcaat |
88 |
Q |
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| T |
589444 |
tagtcaaattagatgagacaccttcctaccattttttcctttacaaacctcatgaaagagtagaaagttatcaaccaat |
589522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 156 - 250
Target Start/End: Original strand, 589623 - 589722
Alignment:
| Q |
156 |
cgatttttctaaaacacaatacacaacattgttggtgcatatcttgaatta------ttttccataatttcagccgagttgataatttgtcttgaagtaa |
249 |
Q |
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|||||| |||||| || ||||||||| |||||||||||| ||||||||||| |||||||||||| || |||||||| ||| ||||||||||||| |
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| T |
589623 |
cgatttctctaaagcaaaatacacaatattgttggtgcacatcttgaattacacctcttttccataattccacccgagttggtaa-ctgtcttgaagtaa |
589721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 109
Target Start/End: Original strand, 13957736 - 13957825
Alignment:
| Q |
20 |
agatgagacactttcctaacattcttccctttacatacctcattaaaaagtagaaaattatcaatcaattcgtctccctacttcgttgtg |
109 |
Q |
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||||||||||| |||||| ||||||||||||| || ||||| || || | || |||||| |||| |||||| |||| | || |||||||| |
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| T |
13957736 |
agatgagacaccttcctaccattcttccctttgcaaacctctttgaagaataaaaaattgtcaaccaattcatctctccacctcgttgtg |
13957825 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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