View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9470_low_13 (Length: 293)
Name: NF9470_low_13
Description: NF9470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9470_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 15 - 276
Target Start/End: Complemental strand, 30277083 - 30276822
Alignment:
| Q |
15 |
tcataatttgacacatctatacacaaaaaagacaatttagtaatattcatacattacatacacattaattaaactacaaacttttcttaatactccatat |
114 |
Q |
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| T |
30277083 |
tcataatttgacacatctatacacaaaaaagacaatttagtaatattcatacattacatacacattaattaaactacaaacttttcttaatactccatat |
30276984 |
T |
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| Q |
115 |
gtgaaaagtatcaaaggggcttataaaaagtgaaggactagtattgttcattcatgtttatgaaggatattcctgcatgttacatacctagctcttgcgt |
214 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30276983 |
gtgaaaagtatcaaaggggcttataaaaagagaaggactagtattgttcattcatgtttatgaaggatattcctgcatgttacatacctagctcttgcgt |
30276884 |
T |
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| Q |
215 |
aggttgcaaaatcagatttctaatctttattctttttattgttgaatggcatataatgttga |
276 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30276883 |
aggttgcaaaatcagatttctaatctttattctttttattgttgaatggcatataatgttga |
30276822 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 106
Target Start/End: Original strand, 30511728 - 30511760
Alignment:
| Q |
74 |
acacattaattaaactacaaacttttcttaata |
106 |
Q |
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||||||||| ||||||||||||||||||||||| |
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| T |
30511728 |
acacattaaataaactacaaacttttcttaata |
30511760 |
T |
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