View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9470_low_2 (Length: 491)
Name: NF9470_low_2
Description: NF9470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9470_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 396; Significance: 0; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 1 - 473
Target Start/End: Original strand, 34422013 - 34422484
Alignment:
| Q |
1 |
gaaagcaaaaccatgtataaactaccccaacatttttggatcatatttatcaagggnnnnnnnntaaaattaagaatatacaaaatacatgtatttgaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |
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| T |
34422013 |
gaaagcaaaaccatgtataaactaccccaacatttttggatcatatttatcaagggaaaataaattaaattaagaatatacaaaatacatgtatttgaaa |
34422112 |
T |
|
| Q |
101 |
agattttatagttattaatt-aaagagaaccatagacgctgaatgaagaatnnnnnnn-ttagttgatgttggttgcactcaccatttgaaacacctttt |
198 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34422113 |
agattttatagttattaatttaaagagaaccatagacgctgaatgaagaataaaaaaaattagttgatgttggttgcactcaccatttgaaacacctttt |
34422212 |
T |
|
| Q |
199 |
cagcatgggcttgaagttgaggactatcttttacctcaggcgtgttcttaagaaaagagaacatgccctttgctgcaggtgctttctctaatatactaat |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34422213 |
cagcatgggcttgaagttgaggactatcttttacctcaggcgtgttcttaagaaaagagaacatgccctttgctgcaggtgctttctctaatatactaat |
34422312 |
T |
|
| Q |
299 |
ttaatcaaaataaccaaacatattcttgttaattaatttacacaatctttttaaaccgtaagtaagcaaaaaaggaaagtacaaactgaaaactcatgca |
398 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
34422313 |
ttaatcaaaataaccaaacatattcttgttaattaatttacacaatctttttaaaccgtaagtaagcaaaaaaggaaagtacaaact---aactcatgca |
34422409 |
T |
|
| Q |
399 |
atatgatacttacatagtgtagaacaagacactatagccgggaagattttgtttaaatgattcccatgagctatt |
473 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34422410 |
atatgatacttacatagtgtagaacaagacactatagccgggaagattttgtttaaatgattcccatgagctatt |
34422484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 180 - 473
Target Start/End: Original strand, 34430466 - 34430759
Alignment:
| Q |
180 |
accatttgaaacaccttttcagcatgggcttgaagttgaggactatcttttacctcaggcgtgttcttaagaaaagagaacatgccctttgctgcaggtg |
279 |
Q |
| |
|
||||||| ||| || ||| ||||||| |||||||||||||||||||||| ||| ||| || | |||||||||||||||||||| ||||||||||||| |
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|
| T |
34430466 |
accatttcaaaaacttttgcagcatgagcttgaagttgaggactatcttgtactccagttgtatctttaagaaaagagaacatgccttttgctgcaggtg |
34430565 |
T |
|
| Q |
280 |
ctttctctaatatactaatttaatcaaaataaccaaacatattcttgttaattaatttacacaatct-ttttaaaccgtaagtaagcaaaaaaggaaagt |
378 |
Q |
| |
|
||||||||||||||||| ||| ||||||| |||||| |||||||||| |||||||||||| |||| ||||| || | | | | |||||| ||||| |
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|
| T |
34430566 |
ctttctctaatatactatttttatcaaaacaaccaagcatattcttgctaattaatttactttatctcttttatactgacaatcaacaaaaatggaaa-- |
34430663 |
T |
|
| Q |
379 |
acaaactgaaa-actcatgcaatatgatacttacatagtgtagaacaagacactatagccgggaagattttgtttaaatgattcccatgagctatt |
473 |
Q |
| |
|
||| | | ||| | ||||| | || | ||||||||||| |||||||| ||||||||||| | ||||||||||| |||||||||||||| ||||| |
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|
| T |
34430664 |
acataatcaaacattcatgagaaataaaacttacatagtatagaacaaaacactatagccagagagattttgtttgaatgattcccatgaactatt |
34430759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 175 - 473
Target Start/End: Complemental strand, 34685946 - 34685644
Alignment:
| Q |
175 |
cactcaccatttgaaacaccttttcagcatgggcttgaagttgaggactatcttttacctcaggcgtgttcttaagaaaagagaacatgccctttgctgc |
274 |
Q |
| |
|
||||||||||| ||| || |||||||| || ||||| ||||| |||||||||| ||| | | | || |||||||||||||||||| ||||||||||| |
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|
| T |
34685946 |
cactcaccattccaaaaactttttcagcgtgagcttggagttggggactatcttgtactcccgttgagtccttaagaaaagagaacataccctttgctgc |
34685847 |
T |
|
| Q |
275 |
aggtgctttctctaatatactaatttaatcaaaataaccaaacatattcttgttaattaatttacacaatct-ttttaaaccgtaagtaagcaaaaaagg |
373 |
Q |
| |
|
|||||||||||||||||||||| |||||| ||| |||||||||||||||||||| ||||||||||| || | ||||||| | || | | ||||| | |
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|
| T |
34685846 |
aggtgctttctctaatatactattttaattaaagcaaccaaacatattcttgttatttaatttacactatttcctttaaacaggaaatcaacaaaatgag |
34685747 |
T |
|
| Q |
374 |
aaagtacaaactgaaa--actcatgcaatat-gatacttacatagtgtagaacaagacactatagccgggaagattttgtttaaatgattcccatgagct |
470 |
Q |
| |
|
||| |||||| ||| ||||||| | || | |||||| |||||||||| || ||||||||||| ||||| |||||||| ||||||||||||||||| |
|
|
| T |
34685746 |
aaaacacaaacaaaaaagactcatgatagataaaaacttacgtagtgtagaagaaaacactatagccaggaaggttttgtttgaatgattcccatgagct |
34685647 |
T |
|
| Q |
471 |
att |
473 |
Q |
| |
|
||| |
|
|
| T |
34685646 |
att |
34685644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 175 - 332
Target Start/End: Complemental strand, 34678797 - 34678640
Alignment:
| Q |
175 |
cactcaccatttgaaacaccttttcagcatgggcttgaagttgaggactatcttttacctcaggcgtgttcttaagaaaagagaacatgccctttgctgc |
274 |
Q |
| |
|
||||||||||| ||| || ||| |||||||| ||||||||| ||||||||||| ||| ||| | || |||||||||||||||||| ||||||||||| |
|
|
| T |
34678797 |
cactcaccattccaaaaacttttccagcatggacttgaagtttaggactatcttgtactccagctgagtccttaagaaaagagaacataccctttgctgc |
34678698 |
T |
|
| Q |
275 |
aggtgctttctctaatatactaatttaatcaaaataaccaaacatattcttgttaatt |
332 |
Q |
| |
|
|||||||||||| |||||||| ||||| ||| ||||||| ||||| ||||||||| |
|
|
| T |
34678697 |
aggtgctttctccaatatactgttttaaataaagcaaccaaaaatattattgttaatt |
34678640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 176 - 308
Target Start/End: Complemental strand, 18270902 - 18270770
Alignment:
| Q |
176 |
actcaccatttgaaacaccttttcagcatgggcttgaagttgaggactatcttttacctcaggcgtgttcttaagaaaagagaacatgccctttgctgca |
275 |
Q |
| |
|
|||||||||| ||| || |||||||| |||||||| |||| ||||||||||| ||| ||| | | ||||||||||||||||||||||||||||||| |
|
|
| T |
18270902 |
actcaccattccaaaaactttttcagcgtgggcttggagtttaggactatcttgtactccagctgaatccttaagaaaagagaacatgccctttgctgca |
18270803 |
T |
|
| Q |
276 |
ggtgctttctctaatatactaatttaatcaaaa |
308 |
Q |
| |
|
|||||||| |||||||||||| |||||| |||| |
|
|
| T |
18270802 |
ggtgctttgtctaatatactattttaataaaaa |
18270770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 195 - 340
Target Start/End: Original strand, 27842420 - 27842566
Alignment:
| Q |
195 |
ttttcagcatgggcttgaagttgaggactatcttttacctcaggcgtgttcttaagaaaagagaacatgccctttgctgcaggtgctttctctaatatac |
294 |
Q |
| |
|
|||||||| || ||||| |||||||||||||||| ||| ||| | || ||||||||||||||||| ||| ||||| |||||||||||||||||||| | |
|
|
| T |
27842420 |
ttttcagcgtgagcttggagttgaggactatcttgtactccagctgagtccttaagaaaagagaacaagccttttgccgcaggtgctttctctaatatgc |
27842519 |
T |
|
| Q |
295 |
taatttaatcaaa-ataaccaaacatattcttgttaattaatttaca |
340 |
Q |
| |
|
|| |||||| ||| | || ||||||||| ||| ||||||||||||| |
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|
| T |
27842520 |
tattttaataaaataaaataaaacatatttttgctaattaatttaca |
27842566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 179 - 332
Target Start/End: Complemental strand, 34649324 - 34649171
Alignment:
| Q |
179 |
caccatttgaaacaccttttcagcatgggcttgaagttgaggactatcttttacctcaggcgtgttcttaagaaaagagaacatgccctttgctgcaggt |
278 |
Q |
| |
|
|||||||| ||| || | ||||||||| ||||| |||| |||||||||| ||| ||| || | ||| |||||||||| ||| |||||| ||||||| |
|
|
| T |
34649324 |
caccatttcaaaaacttgttcagcatgagcttggagttcgggactatcttgtactccagtcgagcccttcagaaaagagagcatatcctttgttgcaggt |
34649225 |
T |
|
| Q |
279 |
gctttctctaatatactaatttaatcaaaataaccaaacatattcttgttaatt |
332 |
Q |
| |
|
|||||||| ||||||||| |||||||||| | ||||| | ||| ||||||||| |
|
|
| T |
34649224 |
gctttctcaaatatactattttaatcaaagcagccaaaaacattattgttaatt |
34649171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 406 - 473
Target Start/End: Complemental strand, 18270687 - 18270620
Alignment:
| Q |
406 |
acttacatagtgtagaacaagacactatagccgggaagattttgtttaaatgattcccatgagctatt |
473 |
Q |
| |
|
|||||||||||||||||||| ||||| || ||||| ||||||||||||| ||||||||||||||| |
|
|
| T |
18270687 |
acttacatagtgtagaacaaaacactgtatttaggaaggttttgtttaaatgcttcccatgagctatt |
18270620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 406 - 474
Target Start/End: Complemental strand, 34678542 - 34678477
Alignment:
| Q |
406 |
acttacatagtgtagaacaagacactatagccgggaagattttgtttaaatgattcccatgagctattt |
474 |
Q |
| |
|
|||||||||||||||||||| |||||||| || | ||||||||||||||||||| ||||||||||| |
|
|
| T |
34678542 |
acttacatagtgtagaacaaaacactataacc---aggattttgtttaaatgattcgaatgagctattt |
34678477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 66; Significance: 6e-29; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 175 - 316
Target Start/End: Original strand, 2068127 - 2068268
Alignment:
| Q |
175 |
cactcaccatttgaaacaccttttcagcatgggcttgaagttgaggactatcttttacctcaggcgtgttcttaagaaaagagaacatgccctttgctgc |
274 |
Q |
| |
|
||||||||||| ||| || ||||||||||| ||| |||| ||||||||||| ||| ||| |||| |||||||||||||||||||||||||||||| |
|
|
| T |
2068127 |
cactcaccattccaaaaactttttcagcatgactttggagtttaggactatcttgtactccagctgtgtccttaagaaaagagaacatgccctttgctgc |
2068226 |
T |
|
| Q |
275 |
aggtgctttctctaatatactaatttaatcaaaataaccaaa |
316 |
Q |
| |
|
||| |||||||| ||||||||| || |||||||||||||||| |
|
|
| T |
2068227 |
aggggctttctccaatatactatttcaatcaaaataaccaaa |
2068268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 249 - 303
Target Start/End: Original strand, 40847524 - 40847578
Alignment:
| Q |
249 |
agaaaagagaacatgccctttgctgcaggtgctttctctaatatactaatttaat |
303 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||| || ||||||||| |||||| |
|
|
| T |
40847524 |
agaaaagaaaacatgccttttgctgcaggtgctttatccaatatactattttaat |
40847578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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