View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9470_low_20 (Length: 242)
Name: NF9470_low_20
Description: NF9470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9470_low_20 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 51145622 - 51145386
Alignment:
| Q |
1 |
cctattttctgtctgatccatttcagttgaaatgctttgaggttgacatcatcaatgagaatttcaccgtcagttggatcataaaatctctctatcaaac |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| |||||||||||| | | |||||||||| |||||| || ||||||||||| |||||||||||||||| |
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|
| T |
51145622 |
cctattttctgtctgatccattttagttgaaattctttgaggttgataccgtcaatgagaacttcaccatctgttggatcatagaatctctctatcaaac |
51145523 |
T |
|
| Q |
101 |
taacaactgtggatttaccactcccactttgccctaccaaagctgcagtagtgccgcttggtaatgaaagagaaaatccattgaatatcagttcatctgg |
200 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
51145522 |
taacaactgtggatttcccacttccactttgccctaccaaagctgcagtagtgccgcttggtaatgaaagagaaaatccattgaatatcagttcatctgg |
51145423 |
T |
|
| Q |
201 |
tcttgtaggataactaaagcaaacatccctgagctct |
237 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51145422 |
tcttgtaggataactaaagcaaacatccctgagctct |
51145386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 51156763 - 51156527
Alignment:
| Q |
1 |
cctattttctgtctgatccatttcagttgaaatgctttgaggttgacatcatcaatgagaatttcaccgtcagttggatcataaaatctctctatcaaac |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| |||||||||||| | | |||||||||| |||||| || ||||||||||| |||||||||||||||| |
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|
| T |
51156763 |
cctattttctgtctgatccattttagttgaaattctttgaggttgataccgtcaatgagaacttcaccatctgttggatcatagaatctctctatcaaac |
51156664 |
T |
|
| Q |
101 |
taacaactgtggatttaccactcccactttgccctaccaaagctgcagtagtgccgcttggtaatgaaagagaaaatccattgaatatcagttcatctgg |
200 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
51156663 |
taacaactgtggatttcccacttccactttgccctaccaaagctgcagtagtgccgcttggtaatgaaagagaaaatccattgaatatcagttcatctgg |
51156564 |
T |
|
| Q |
201 |
tcttgtaggataactaaagcaaacatccctgagctct |
237 |
Q |
| |
|
|||||||||||||||||||||||||| | |||||||| |
|
|
| T |
51156563 |
tcttgtaggataactaaagcaaacattcttgagctct |
51156527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 51199611 - 51199375
Alignment:
| Q |
1 |
cctattttctgtctgatccatttcagttgaaatgctttgaggttgacatcatcaatgagaatttcaccgtcagttggatcataaaatctctctatcaaac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||| | |||||||||| |||||| | |||||||||||||||||||||||||| |
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|
| T |
51199611 |
cctattttctgtctgatccatttcagttgaaattctttgaggttgacaccgtcaatgagaacttcaccagcctgtggatcataaaatctctctatcaaac |
51199512 |
T |
|
| Q |
101 |
taacaactgtggatttaccactcccactttgccctaccaaagctgcagtagtgccgcttggtaatgaaagagaaaatccattgaatatcagttcatctgg |
200 |
Q |
| |
|
| |||||||||||||| ||||||||||||||||||||||||||| ||||||| || ||||||| || |||||||||||||||||||||||||||||||| |
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|
| T |
51199511 |
tgacaactgtggattttccactcccactttgccctaccaaagctacagtagtcccacttggtattgttagagaaaatccattgaatatcagttcatctgg |
51199412 |
T |
|
| Q |
201 |
tcttgtaggataactaaagcaaacatccctgagctct |
237 |
Q |
| |
|
|||||||||||||||||||||||| ||||| |||||| |
|
|
| T |
51199411 |
tcttgtaggataactaaagcaaacctccctaagctct |
51199375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 29937306 - 29937526
Alignment:
| Q |
1 |
cctattttctgtctgatccatttcagttgaaatgctttgaggttgacatcatcaatgagaatttcaccgtcagttggatcataaaatctctctatcaaac |
100 |
Q |
| |
|
|||||||||||||||||||||||||| | |||| |||||||| ||| | | |||||||||| |||||| | ||||||||||| ||||||||||| |||| |
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|
| T |
29937306 |
cctattttctgtctgatccatttcagattaaattctttgaggctgataccgtcaatgagaacttcaccatttgttggatcatagaatctctctattaaac |
29937405 |
T |
|
| Q |
101 |
taacaactgtggatttaccactcccactttgccctaccaaagctgcagtagtgccgcttggtaatgaaagagaaaatccattgaatatcagttcatctgg |
200 |
Q |
| |
|
| | ||||| ||||| |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
29937406 |
tgatgactgtagatttcccactcccactttgccctaccaaagctgcagtggtgccgctttgtaatgaaagagaaaatccatcgaatatcagttcatctgg |
29937505 |
T |
|
| Q |
201 |
tcttgtaggataactaaagca |
221 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
29937506 |
tcttgtaggataactaaagca |
29937526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 51212757 - 51212521
Alignment:
| Q |
1 |
cctattttctgtctgatccatttcagttgaaatgctttgaggttgacatcatcaatgagaatttcaccgtcagttggatcataaaatctctctatcaaac |
100 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| || |||||| | | | ||||||| ||||| ||| || ||||||||||||||||||||||||| |
|
|
| T |
51212757 |
cctattttctgtctgatccatttcaattgaaattctctgaggtcaataccgtcaatgataatttgaccatcctgtggatcataaaatctctctatcaaat |
51212658 |
T |
|
| Q |
101 |
taacaactgtggatttaccactcccactttgccctaccaaagctgcagtagtgccgcttggtaatgaaagagaaaatccattgaatatcagttcatctgg |
200 |
Q |
| |
|
| | ||||| ||||| ||||||||||||||||| || ||||| | ||||| || |||| || |||||||||||| |||||||||| ||||||| ||| |
|
|
| T |
51212657 |
ttatcactgttgattttccactcccactttgcccgactaaagccacggtagtaccacttgatatcgaaagagaaaatgcattgaatattagttcatttgg |
51212558 |
T |
|
| Q |
201 |
tcttgtaggataactaaagcaaacatccctgagctct |
237 |
Q |
| |
|
|||||||||||||||||||||||| ||||| |||||| |
|
|
| T |
51212557 |
tcttgtaggataactaaagcaaacctccctaagctct |
51212521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 110; Significance: 1e-55; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 49737257 - 49737486
Alignment:
| Q |
1 |
cctattttctgtctgatccatttcagttgaaatgctttgaggttgacatcatcaatgagaatttcaccgtcagttggatcataaaatctctctatcaaac |
100 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| |||||||||||| || ||||||||||||||||| | |||||||||||||||||||||||||| |
|
|
| T |
49737257 |
cctattttttgtctgatccatttcagttgaaattctttgaggttgatattgtcaatgagaatttcaccaccctgtggatcataaaatctctctatcaaac |
49737356 |
T |
|
| Q |
101 |
taacaactgtggatttaccactcccactttgccctaccaaagctgcagtagtgccgcttggtaatgaaagagaaaatccattgaatatcagttcatctgg |
200 |
Q |
| |
|
||| ||| || ||||| |||||||||||||| ||||||||||| || |||||||| |||| || ||||| ||||| | ||| |||||||| ||||| ||| |
|
|
| T |
49737357 |
taataaccgtcgatttcccactcccactttgtcctaccaaagccgcggtagtgccacttgatattgaaatagaaagtgcatcgaatatcatttcatttgg |
49737456 |
T |
|
| Q |
201 |
tcttgtaggataactaaagcaaacatccct |
230 |
Q |
| |
|
|||| |||||||| ||||||||| ||||| |
|
|
| T |
49737457 |
ccttgaaggataaccaaagcaaacttccct |
49737486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 36285969 - 36285752
Alignment:
| Q |
1 |
cctattttctgtctgatccatttcagttgaaatgctttgaggttgacatcatcaatgagaatttcaccgtcagttggatcataaaatctctctatcaaac |
100 |
Q |
| |
|
|||||||||||||| |||||||| || |||||| |||| | ||||| | |||||||||| || || | ||||||||||| |||||||||| |
|
|
| T |
36285969 |
cctattttctgtctaatccatttaagctgaaattcttttacgttgattccgtcaatgagaacttgtccagcttgtggatcataaagcctctctatcaggt |
36285870 |
T |
|
| Q |
101 |
taacaactgtggatttaccactcccactttgccctaccaaagctgcagtagtgccgcttggtaatgaaagagaaaatccattgaatatcagttcatctgg |
200 |
Q |
| |
|
||| |||||| ||||| ||||||||||||||||| ||||||||||| || || || ||||||| ||||||||||||||| |||||||| || |||||| |
|
|
| T |
36285869 |
taataactgttgatttcccactcccactttgccccaccaaagctgctgttgttccccttggtattgaaagagaaaatcctttgaatatagcttgatctgg |
36285770 |
T |
|
| Q |
201 |
tcttgtaggataactaaa |
218 |
Q |
| |
|
|||| |||||||||||| |
|
|
| T |
36285769 |
ccttgaaggataactaaa |
36285752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 75 - 215
Target Start/End: Original strand, 38525898 - 38526038
Alignment:
| Q |
75 |
tggatcataaaatctctctatcaaactaacaactgtggatttaccactcccactttgccctaccaaagctgcagtagtgccgcttggta-atgaaagaga |
173 |
Q |
| |
|
||||||||| ||||| |||| |||||||| ||||||||| || ||||| |||||||| || ||||| || || || || ||||||| || ||||| |||| |
|
|
| T |
38525898 |
tggatcatagaatctttctaccaaactaataactgtggactttccacttccactttgtccaaccaatgccgcggttgttccgcttgatatatgaa-gaga |
38525996 |
T |
|
| Q |
174 |
aaatccattgaatatcagttcatctggtcttgtaggataact |
215 |
Q |
| |
|
||||||||||||||||| || || ||||||| |||||||| |
|
|
| T |
38525997 |
gaatccattgaatatcagctcctcaggtcttgccggataact |
38526038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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