View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9470_low_6 (Length: 340)
Name: NF9470_low_6
Description: NF9470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9470_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 80 - 337
Target Start/End: Original strand, 34584545 - 34584796
Alignment:
| Q |
80 |
ggataagtggactgtacaagaaaacaggacttaaaaagagggattcaatgtctgttattttttagatatataaatgtccattcatttttactcttgcttt |
179 |
Q |
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| T |
34584545 |
ggataagtggactgttcaagaaaacaggacttaaaaag------tcaatgtctgttattttttagatatataaatgtccattcatttttactcttgcttt |
34584638 |
T |
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| Q |
180 |
tgaatatgttgtcaagagtcccttgaatcttttcttcaataaattgttttgaaattatcttctattcagttgaagtgtgtttactcatacttgctgatgc |
279 |
Q |
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| T |
34584639 |
tgtatatgttgtcaagagtcccttgaatcttttcttcaataaattgttttgaaattatcttttattcagttgaagagtgtttactcatacttgctgatgc |
34584738 |
T |
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| Q |
280 |
ccattggtttgccttgctgatccacttttctattcatgtttccttgcttggtcccttt |
337 |
Q |
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| T |
34584739 |
ccatttgtttgccttgctgatccacttttctattcatgtttccttgcttggtcccttt |
34584796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 19 - 76
Target Start/End: Complemental strand, 34583128 - 34583071
Alignment:
| Q |
19 |
atctggagggttattgggagagtgacattggtcgccatggcaaaaattgagttaaaaa |
76 |
Q |
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| T |
34583128 |
atctggagggttattgggagagtgacattggtcgccatggcaaaaattgagttaaaaa |
34583071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 112 - 277
Target Start/End: Original strand, 34586015 - 34586174
Alignment:
| Q |
112 |
aaaaagagggattcaatgtctgttattttttagatatataaatgtccattcatttttactcttgcttttgaatatgttgtcaagagtcccttgaa----t |
207 |
Q |
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| T |
34586015 |
aaaaagagggattcaaagtctgttatattttagttatataa-----------tttttactcttgcttttgtatatgttgt-tagagtccctgaaatcttt |
34586102 |
T |
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| Q |
208 |
cttttcttcaataaattgttttgaaattatcttctat--tcagttgaagtgtgtttactcatacttgctgat |
277 |
Q |
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| T |
34586103 |
cttttcttcaatagattgttttgaaattatcttttatgatcaggtgaagtgtgtttactcatacttgctgat |
34586174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 74; Significance: 7e-34; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 163 - 301
Target Start/End: Original strand, 19179735 - 19179873
Alignment:
| Q |
163 |
atttttactcttgcttttgaatatgttgtcaagagtcccttgaatcttttcttcaataaattgttttgaaattatcttctat--tcagttgaagtgtgtt |
260 |
Q |
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| T |
19179735 |
atttttactcttgcttttgtatatgttgtca-gagtcccttgaatcttttcttaaatagattgttttgaaattgtcttttatgagcagttg-agtgtgtt |
19179832 |
T |
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| Q |
261 |
tactcatacttgctgatgcccattggtttgccttgctgatc |
301 |
Q |
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| T |
19179833 |
tactcatacttgctgatgccctttactttgccttgcagatc |
19179873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 163 - 281
Target Start/End: Original strand, 1478115 - 1478233
Alignment:
| Q |
163 |
atttttactcttgcttttgaatatgttgtcaagagtcccttgaatcttttcttcaataaattgttttgaaattatcttctat--tcagttgaagtgtgtt |
260 |
Q |
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| T |
1478115 |
attttaactcttgcttttgtatatgttgtca-gagtcccttgaatcttttcttaaatagattgttttgaaattgtcttttatgagcagttg-agtgtgtt |
1478212 |
T |
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| Q |
261 |
tactcatacttgctgatgccc |
281 |
Q |
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| T |
1478213 |
tactcatacttgctgatgccc |
1478233 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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