View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9471_high_5 (Length: 250)
Name: NF9471_high_5
Description: NF9471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9471_high_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 109187 - 109429
Alignment:
| Q |
1 |
catttctgtatttacatttttctaatatcgtcctcactttgttaactatgttaccaggtgtgcggacgataagccatatgtgcctacatatcagttttcc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
109187 |
catttctgtatttacatttttctaatatcgtcttcactttgttaactatgttaccaggtgtgcggacgataagccatatgtgcctacatatcagttttcc |
109286 |
T |
|
| Q |
101 |
aaagaaaaagcaaagagtttgggaattgaatatactcctttggaagtgagcatcaaggaaactgttgaaagtttgaaagaaaagaagttcgtcaactttt |
200 |
Q |
| |
|
|||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
109287 |
aaagaaaaggcaacgagtttgggaattgaatatactcctttggaagtgagcatcaaggaaactgttgaaagtttgaaagaaaagaagttcgtcaactttt |
109386 |
T |
|
| Q |
201 |
aatttgtgatatctccttgtttaggtttttgatgcctatgctt |
243 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
109387 |
aatttgtgatatctccttgtttaggtttttgatgcctatgctt |
109429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 11 - 224
Target Start/End: Original strand, 90400 - 90613
Alignment:
| Q |
11 |
tttacatttttctaatatcgtcctcactttgttaactatgttaccaggtgtgcggacgataagccatatgtgcctacatatcagttttccaaagaaaaag |
110 |
Q |
| |
|
|||| |||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| | |
|
|
| T |
90400 |
tttagatttttctaatatcgttttcactttgtcaactatgttaccaggtgtgcggacgataagccatatgtgcctatatatcaggtttccaaagaaaagg |
90499 |
T |
|
| Q |
111 |
caaagagtttgggaattgaatatactcctttggaagtgagcatcaaggaaactgttgaaagtttgaaagaaaagaagttcgtcaacttttaatttgtgat |
210 |
Q |
| |
|
| || || |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| ||||||||||| | |
|
|
| T |
90500 |
cgaaaagcttgggacttgaatatactcctttggaagtgagcatcaaggagactgttgaaagtttgaaagaaaagaagttcgccaacctttaatttgtggt |
90599 |
T |
|
| Q |
211 |
atctccttgtttag |
224 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
90600 |
atctccttgtttag |
90613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 68 - 214
Target Start/End: Original strand, 2708966 - 2709120
Alignment:
| Q |
68 |
gataagccatatgtgcctacatatcagttttccaaagaaaaagcaaagagtttgggaattgaatatactcctttggaagtgagcatca--------agga |
159 |
Q |
| |
|
|||||||| || |||||||||||||| ||||||||||||| | ||||| ||||||||||||| |||| ||||||||| ||||||| |||| |
|
|
| T |
2708966 |
gataagccgtacatgcctacatatcaggtttccaaagaaaaggtcaagagcttgggaattgaattaactcttttggaagtcagcatcaaggagagtagga |
2709065 |
T |
|
| Q |
160 |
aactgttgaaagtttgaaagaaaagaagttcgtcaacttttaatttgtgatatct |
214 |
Q |
| |
|
||||| |||| |||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
2709066 |
gactgtggaaaatttgaaagaaaagaagttcgccaacttttaatttgtgatatct |
2709120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 81 - 207
Target Start/End: Original strand, 25936423 - 25936549
Alignment:
| Q |
81 |
tgcctacatatcagttttccaaagaaaaagcaaagagtttgggaattgaatatactcctttggaagtgagcatcaaggaaactgttgaaagtttgaaaga |
180 |
Q |
| |
|
|||| ||||||||| |||| || ||||| || |||||||||||||| || | |||| |||||||||| | | ||||||| ||||| ||||| || | ||| |
|
|
| T |
25936423 |
tgccaacatatcagatttctaaggaaaaggctaagagtttgggaatcgagtttacttctttggaagtcaccctcaaggagactgtggaaagcttcagaga |
25936522 |
T |
|
| Q |
181 |
aaagaagttcgtcaacttttaatttgt |
207 |
Q |
| |
|
|| ||| ||||||||||||||||||| |
|
|
| T |
25936523 |
gaaaaagatcgtcaacttttaatttgt |
25936549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University