View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9471_low_16 (Length: 239)
Name: NF9471_low_16
Description: NF9471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9471_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 17 - 224
Target Start/End: Original strand, 3468689 - 3468896
Alignment:
| Q |
17 |
ggaggtagcgcatcacatcctcttgacttagccaacaatatgcacgcttatcattgtgcaaaatctcattctcctttttcttccacttgttctcatcgga |
116 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
3468689 |
ggaggtagcgcattacatcctcttgacttagccaacaatatgcacgcttatcattgtgcaaaatctcattctcctttttcttacacttgttctcatcgga |
3468788 |
T |
|
| Q |
117 |
tattggcatcaccacattctgcaccccttcatccattacatctatagtctccaataaactgcatgcgacatctcaaaataaaattattaattgaataaag |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3468789 |
tattggcatcaccacattctgcaccccttcatccattacatctatagtctccaataaactgcatgcgacatctcaaaataaaattattaattgaataaag |
3468888 |
T |
|
| Q |
217 |
aataatat |
224 |
Q |
| |
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|||||||| |
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| T |
3468889 |
aataatat |
3468896 |
T |
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