View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9471_low_17 (Length: 219)

Name: NF9471_low_17
Description: NF9471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9471_low_17
NF9471_low_17
[»] chr7 (19 HSPs)
chr7 (42-202)||(21717029-21717189)
chr7 (34-202)||(21682948-21683116)
chr7 (51-202)||(21786704-21786855)
chr7 (50-202)||(21727737-21727889)
chr7 (45-189)||(21697727-21697871)
chr7 (46-202)||(21666603-21666759)
chr7 (51-202)||(21773176-21773327)
chr7 (51-162)||(21657752-21657863)
chr7 (34-126)||(21727022-21727114)
chr7 (54-202)||(21789465-21789613)
chr7 (51-162)||(21630069-21630180)
chr7 (51-162)||(21793103-21793214)
chr7 (54-202)||(15714926-15715074)
chr7 (54-202)||(21711020-21711168)
chr7 (54-184)||(21647850-21647980)
chr7 (45-202)||(21653168-21653325)
chr7 (63-200)||(21994548-21994685)
chr7 (54-163)||(21705599-21705708)
chr7 (54-163)||(21765225-21765334)
[»] scaffold0182 (1 HSPs)
scaffold0182 (54-128)||(26569-26643)


Alignment Details
Target: chr7 (Bit Score: 129; Significance: 6e-67; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 42 - 202
Target Start/End: Original strand, 21717029 - 21717189
Alignment:
Q  42 gatatatacgaacataaaagatctaaaagcagtaggaataagacttaagtcaagcaagacacgaaggccaagagacatagatttctccgaaggattgttc 141  Q
    |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  21717029 gatatacacgaacataaaagatctaaaagcattaggaataagacttaagtcaagcaagacacgaaggccaagagacatagatttctccgaaggatggttc 21717128  T
Q  142 actgtcgaactgactcttcctgagatcgttgtggacgactcattagccgctactttcctca 202  Q
    ||||  ||||||||||||||||||||||||||||||||| | | |||||||||||||||||    
T  21717129 actgctgaactgactcttcctgagatcgttgtggacgacacttcagccgctactttcctca 21717189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 34 - 202
Target Start/End: Original strand, 21682948 - 21683116
Alignment:
Q  34 atgaacacgatatatacgaacataaaagatctaaaagcagtaggaataagacttaagtcaagcaagacacgaaggccaagagacatagatttctccgaag 133  Q
    ||||| |||||||| | |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||    
T  21682948 atgaagacgatatacatgaacataaaagatctaaaagcactaggaataagacttaagtcaagcaagacacgaaggccaaaagacatagatttcaccgaag 21683047  T
Q  134 gattgttcactgtcgaactgactcttcctgagatcgttgtggacgactcattagccgctactttcctca 202  Q
    ||| ||||||||  ||||| ||||||||||||||||||||||||||| ||| |||| ||||||||||||    
T  21683048 gatggttcactgcagaactaactcttcctgagatcgttgtggacgacacatcagccactactttcctca 21683116  T

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Target: chr7; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 51 - 202
Target Start/End: Original strand, 21786704 - 21786855
Alignment:
Q  51 gaacataaaagatctaaaagcagtaggaataagacttaagtcaagcaagacacgaaggccaagagacatagatttctccgaaggattgttcactgtcgaa 150  Q
    ||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||  |||    
T  21786704 gaacatacaagatctaagagctgtaggaataagacttaagtcaagcaagacacgaaggccaagagacatagatttctccgaaggattgttcgctgcagaa 21786803  T
Q  151 ctgactcttcctgagatcgttgtggacgactcattagccgctactttcctca 202  Q
    |||||||||||||||||||||||||||||| | | |||||||||||||||||    
T  21786804 ctgactcttcctgagatcgttgtggacgacacttcagccgctactttcctca 21786855  T

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Target: chr7; HSP #4
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 50 - 202
Target Start/End: Original strand, 21727737 - 21727889
Alignment:
Q  50 cgaacataaaagatctaaaagcagtaggaataagacttaagtcaagcaagacacgaaggccaagagacatagatttctccgaaggattgttcactgtcga 149  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||  ||    
T  21727737 cgaacataaaagatctaaaagcattaggaataagacttaagtcaagcaagagacgaaggccaagagacatagatttctccgaaggatggttcactgcaga 21727836  T
Q  150 actgactcttcctgagatcgttgtggacgactcattagccgctactttcctca 202  Q
    ||| |||||||| ||||||||||||||| ||  || |||||||||||||||||    
T  21727837 actaactcttcccgagatcgttgtggacaacatatcagccgctactttcctca 21727889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 45 - 189
Target Start/End: Original strand, 21697727 - 21697871
Alignment:
Q  45 atatacgaacataaaagatctaaaagcagtaggaataagacttaagtcaagcaagacacgaaggccaagagacatagatttctccgaaggattgttcact 144  Q
    ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||| |||||||| |||| ||    
T  21697727 atataggaacatacaagatctaaaagcagtaggaataagacttaagtcaagcaagacacaaagcccaagagacatggatttctgcgaaggatggttcgct 21697826  T
Q  145 gtcga-actgactcttcctgagatcgttgtggacgactcattagcc 189  Q
    | ||| ||||||||| ||||||||||||||||||||| ||||||||    
T  21697827 g-cgacactgactctacctgagatcgttgtggacgacacattagcc 21697871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 46 - 202
Target Start/End: Original strand, 21666603 - 21666759
Alignment:
Q  46 tatacgaacataaaagatctaaaagcagtaggaataagacttaagtcaagcaagacacgaaggccaagagacatagatttctccgaaggattgttcactg 145  Q
    |||| ||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||  |||||| |||||||||||| ||||| |||| |||    
T  21666603 tataggaacatacaagatctaaaagcagtaggaataagagttaagtcaagcaagacacgatggctgagagacttagatttctccgcaggatggttcgctg 21666702  T
Q  146 tcgaactgactcttcctgagatcgttgtggacgactcattagccgctactttcctca 202  Q
       |||||||||||||||||||||||||||||||| ||| |||| ||| ||||||||    
T  21666703 cgaaactgactcttcctgagatcgttgtggacgacacatcagccactattttcctca 21666759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 51 - 202
Target Start/End: Original strand, 21773176 - 21773327
Alignment:
Q  51 gaacataaaagatctaaaagcagtaggaataagacttaagtcaagcaagacacgaaggccaagagacatagatttctccgaaggattgttcactgtcgaa 150  Q
    ||||||| ||||||||| ||  ||||||||||   ||||||||||||||||  ||||||||||||||||||||||||| ||||||||||||||||  |||    
T  21773176 gaacatacaagatctaagagatgtaggaataaattttaagtcaagcaagacgagaaggccaagagacatagatttctctgaaggattgttcactgcagaa 21773275  T
Q  151 ctgactcttcctgagatcgttgtggacgactcattagccgctactttcctca 202  Q
    ||||||||||||||||| |||||||||||||||| |||| |||| |||||||    
T  21773276 ctgactcttcctgagattgttgtggacgactcatcagccactacattcctca 21773327  T

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Target: chr7; HSP #8
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 51 - 162
Target Start/End: Original strand, 21657752 - 21657863
Alignment:
Q  51 gaacataaaagatctaaaagcagtaggaataagacttaagtcaagcaagacacgaaggccaagagacatagatttctccgaaggattgttcactgtcgaa 150  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||| || ||||| |||| |||  |||    
T  21657752 gaacatacaagatctaaaagcagtaggaataagacttaagtcaagcatgacacaaaggctaagagacatagatttctgcggaggatggttctctgcagaa 21657851  T
Q  151 ctgactcttcct 162  Q
    ||||||||||||    
T  21657852 ctgactcttcct 21657863  T

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Target: chr7; HSP #9
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 34 - 126
Target Start/End: Original strand, 21727022 - 21727114
Alignment:
Q  34 atgaacacgatatatacgaacataaaagatctaaaagcagtaggaataagacttaagtcaagcaagacacgaaggccaagagacatagatttc 126  Q
    ||||| |||||||| | |||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| |||||    
T  21727022 atgaagacgatatacatgaacataaaagatctaaaagcactaggaataagacttaagtcaagcaagatacgaaggccaagagacataaatttc 21727114  T

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Target: chr7; HSP #10
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 54 - 202
Target Start/End: Original strand, 21789465 - 21789613
Alignment:
Q  54 cataaaagatctaaaagcagtaggaataagacttaagtcaagcaagacacgaaggccaagagacatagatttctccgaaggattgttcactgtcgaactg 153  Q
    |||| ||||||||| |||||| ||||||||||||||||||||   |||||| ||||||| |||| |||||||||| | ||||| |||| |||   |||||    
T  21789465 catacaagatctaagagcagtcggaataagacttaagtcaagtgcgacacggaggccaacagacgtagatttctctgcaggatggttcgctgcgaaactg 21789564  T
Q  154 actcttcctgagatcgttgtggacgactcattagccgctactttcctca 202  Q
    ||||||||||||||||||||||||||| | | |||||| ||||||||||    
T  21789565 actcttcctgagatcgttgtggacgacacttcagccgcaactttcctca 21789613  T

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Target: chr7; HSP #11
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 51 - 162
Target Start/End: Original strand, 21630069 - 21630180
Alignment:
Q  51 gaacataaaagatctaaaagcagtaggaataagacttaagtcaagcaagacacgaaggccaagagacatagatttctccgaaggattgttcactgtcgaa 150  Q
    ||||||| ||||||||||||| |||||||||||||||||| |||||| ||||| ||||||||||||||||||||||| || ||||| |||| |||  |||    
T  21630069 gaacatacaagatctaaaagctgtaggaataagacttaagacaagcatgacacaaaggccaagagacatagatttctgcggaggatggttcgctgcagaa 21630168  T
Q  151 ctgactcttcct 162  Q
    ||||||||||||    
T  21630169 ctgactcttcct 21630180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 51 - 162
Target Start/End: Original strand, 21793103 - 21793214
Alignment:
Q  51 gaacataaaagatctaaaagcagtaggaataagacttaagtcaagcaagacacgaaggccaagagacatagatttctccgaaggattgttcactgtcgaa 150  Q
    ||||||| ||||||||||||| |||||||||||||||||||||||||| |||| ||| |||| ||||||| |||||||||| |||| ||||||||  |||    
T  21793103 gaacatacaagatctaaaagctgtaggaataagacttaagtcaagcaatacaccaagcccaaaagacatacatttctccgatggatggttcactgcagaa 21793202  T
Q  151 ctgactcttcct 162  Q
    ||||||||||||    
T  21793203 ctgactcttcct 21793214  T

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Target: chr7; HSP #13
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 54 - 202
Target Start/End: Original strand, 15714926 - 15715074
Alignment:
Q  54 cataaaagatctaaaagcagtaggaataagacttaagtcaagcaagacacgaaggccaagagacatagatttctccgaaggattgttcactgtcgaactg 153  Q
    |||| ||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||| ||||||||||| | ||||| |||  |||   |||||    
T  15714926 catacaagatctaagagcagtaggaataagacttaagtcaagcaagacacaaaggccaacagagatagatttctctgcaggatggtttgctgcgaaactg 15715025  T
Q  154 actcttcctgagatcgttgtggacgactcattagccgctactttcctca 202  Q
    |||||||||  ||||  ||||||| || |   |||||||||||||||||    
T  15715026 actcttcctcggatccgtgtggacaacactacagccgctactttcctca 15715074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 54 - 202
Target Start/End: Original strand, 21711020 - 21711168
Alignment:
Q  54 cataaaagatctaaaagcagtaggaataagacttaagtcaagcaagacacgaaggccaagagacatagatttctccgaaggattgttcactgtcgaactg 153  Q
    |||||||||||||| |  | ||||||||||||||||||| |||||||||| ||| ||||||||||| ||||||||||||||||  ||   ||   |||||    
T  21711020 cataaaagatctaagaaaaataggaataagacttaagtctagcaagacacaaagtccaagagacatggatttctccgaaggatgattggttgcaaaactg 21711119  T
Q  154 actcttcctgagatcgttgtggacgactcattagccgctactttcctca 202  Q
    ||  | ||||||||||||||||||||| ||| ||| |||||||||||||    
T  21711120 acattacctgagatcgttgtggacgacacatcagctgctactttcctca 21711168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 54 - 184
Target Start/End: Original strand, 21647850 - 21647980
Alignment:
Q  54 cataaaagatctaaaagcagtaggaataagacttaagtcaagcaagacacgaaggccaagagacatagatttctccgaaggattgttcactgtcgaactg 153  Q
    |||| ||||||||| |  |||||||||||||||||||||||||| ||| ||||| ||||||||| | |||||||| ||||||| ||| | ||   | ||     
T  21647850 catacaagatctaagaaaagtaggaataagacttaagtcaagcatgactcgaagtccaagagacttggatttctctgaaggatggttgattgcaaagcta 21647949  T
Q  154 actcttcctgagatcgttgtggacgactcat 184  Q
    ||||| |||||||||||||||||||||||||    
T  21647950 actctacctgagatcgttgtggacgactcat 21647980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 45 - 202
Target Start/End: Original strand, 21653168 - 21653325
Alignment:
Q  45 atatacgaacataaaagatctaaaagcagtaggaataagacttaagtcaagcaagacacgaaggccaagagacatagatttctccgaaggattgttcact 144  Q
    ||||| ||||||| ||||||||||||||| |||| ||||| |||||||||||   ||||| ||||||| ||||||  |||||| |||||||| | | ||     
T  21653168 atataggaacatacaagatctaaaagcagcaggagtaagatttaagtcaagcttcacacgtaggccaaaagacattaatttctacgaaggatggcttacc 21653267  T
Q  145 gtcgaactgactcttcctgagatcgttgtggacgactcattagccgctactttcctca 202  Q
    |   |||| | ||||||||||||||||||||||||| | | |||| ||||||||||||    
T  21653268 gcaaaactaattcttcctgagatcgttgtggacgacacttcagccactactttcctca 21653325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 63 - 200
Target Start/End: Original strand, 21994548 - 21994685
Alignment:
Q  63 tctaaaagcagtaggaataagacttaagtcaagcaagacacgaaggccaagagacatagatttctccgaaggattgttcactgtcgaactgactcttcct 162  Q
    ||||| ||||||||||||| |||||||||||| |  ||||||||  |||  |  |||||| ||| | ||||||| ||||||||   || |||||||||||    
T  21994548 tctaagagcagtaggaatacgacttaagtcaaccgcgacacgaaatccacaaagcatagaattcgctgaaggatggttcactgcgaaattgactcttcct 21994647  T
Q  163 gagatcgttgtggacgactcattagccgctactttcct 200  Q
    |||||||||||||||||   || |||||||||| ||||    
T  21994648 gagatcgttgtggacgatagatcagccgctactatcct 21994685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 54 - 163
Target Start/End: Original strand, 21705599 - 21705708
Alignment:
Q  54 cataaaagatctaaaagcagtaggaataagacttaagtcaagcaagacacgaaggccaagagacatagatttctccgaaggattgttcactgtcgaactg 153  Q
    |||| ||||||||| |||||||||||||||||||||| |||||   ||| | ||||||| |||| |||||||| | | ||||| ||| ||||   |||||    
T  21705599 catagaagatctaagagcagtaggaataagacttaaggcaagcgcaacagggaggccaacagacgtagatttcactgcaggatggtttactgcaaaactg 21705698  T
Q  154 actcttcctg 163  Q
    ||| ||||||    
T  21705699 actattcctg 21705708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 54 - 163
Target Start/End: Original strand, 21765225 - 21765334
Alignment:
Q  54 cataaaagatctaaaagcagtaggaataagacttaagtcaagcaagacacgaaggccaagagacatagatttctccgaaggattgttcactgtcgaactg 153  Q
    |||| ||||||||| |||||||||||||||||||||| |||||   ||| | ||||||| |||| |||||||| | | ||||| ||| ||||   |||||    
T  21765225 catagaagatctaagagcagtaggaataagacttaagacaagcgcaacaaggaggccaacagacgtagatttcactgcaggatggtttactgcaaaactg 21765324  T
Q  154 actcttcctg 163  Q
    ||| ||||||    
T  21765325 actattcctg 21765334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 54 - 128
Target Start/End: Original strand, 26569 - 26643
Alignment:
Q  54 cataaaagatctaaaagcagtaggaataagacttaagtcaagcaagacacgaaggccaagagacatagatttctc 128  Q
    |||| ||||||||| ||||||||||||||| |||||| |||||   |||| || ||||| |||||||||||||||    
T  26569 catagaagatctaagagcagtaggaataagtcttaaggcaagctttacaccaaagccaacagacatagatttctc 26643  T

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