View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9471_low_6 (Length: 331)
Name: NF9471_low_6
Description: NF9471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9471_low_6 |
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| [»] chr3 (6 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 247; Significance: 1e-137; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 7 - 331
Target Start/End: Original strand, 5325196 - 5325528
Alignment:
| Q |
7 |
aaatacatctaggtagaactcaggtttattgatgaaatgaatatcaaggaaaaccccgatttggcagagatgatgctgtgcttttcctccaccaaaggct |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
5325196 |
aaatacatctaggtagaactcaggtttattgatgaaatgaatatcaaggaaaaccccgatttggcggagatgatgctgtgcttttcctccaccaaaggct |
5325295 |
T |
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| Q |
107 |
cctccaacactcacaatggcagcaggctttccagcccaaacatttggtggtcttgatgcccaatcaattgcattctttagcggggctg-nnnnnnnntgc |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
5325296 |
cctccaacactcacaatggcagcaggctttccagcccaaacatttggtggtcttgatgcccaatcaattgcattctttagcggggctgaaaaaaaaatgc |
5325395 |
T |
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| Q |
206 |
gagaaaagaataaattagcaaaaagaagcttattgataaaggttataaaga-------aacatgatgttgacttacctgagacagaataattatattcag |
298 |
Q |
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|||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||| |
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| T |
5325396 |
gagaaaagaataaattagtaaaaagaagcttattgacaaaggttataaagaaaaagacaacatgatgtttacttacctgagacagaataattatactcag |
5325495 |
T |
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| Q |
299 |
gagaagcaaagagaacgctatcagctgcaagaa |
331 |
Q |
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|||||||||||||||| ||||||||| |||||| |
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| T |
5325496 |
gagaagcaaagagaacactatcagcttcaagaa |
5325528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 23 - 331
Target Start/End: Complemental strand, 5351899 - 5351592
Alignment:
| Q |
23 |
aactcaggtttattgatgaaatgaatatcaaggaaaaccccgatttggcagagatgatgctgtgcttttcctccaccaaaggctcctccaacactcacaa |
122 |
Q |
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| T |
5351899 |
aactcgggtttattgatgaaatgaagatcgatgaaaactccaatttgtcggagatgatagtgtgactttgcaccgccgtgtcctcctccaacactcacta |
5351800 |
T |
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| Q |
123 |
tggcagcaggctttccagcccaaacatttggtggtcttgatgcccaatcaattgcattctttagcggggctgnnnnnnnntgcgagaaaagaataaatta |
222 |
Q |
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| T |
5351799 |
tggcagcagactttccagcccaaacatttggtggtcttgatgcccaatcaattgcattctttagtggagctgaaaaaaa-tgcaagaaaagaataaatta |
5351701 |
T |
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| Q |
223 |
gcaaaaagaagcttattgataaaggttataaagaaacatgatgttgacttacctgagacagaataattatattcaggagaagcaaagagaacgctatcag |
322 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
5351700 |
gcaaaaagaagcttattgacaaaggttataaagaaacatgatgttgacttacctgagacagaataattatattcaggagaagcaaagagaacactatcag |
5351601 |
T |
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| Q |
323 |
ctgcaagaa |
331 |
Q |
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| T |
5351600 |
cagcaagaa |
5351592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 7 - 186
Target Start/End: Original strand, 5338216 - 5338395
Alignment:
| Q |
7 |
aaatacatctaggtagaactcaggtttattgatgaaatgaatatcaaggaaaaccccgatttggcagagatgatgctgtgcttttcctccaccaaaggct |
106 |
Q |
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|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || ||||||||||||||||||||| |
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| T |
5338216 |
aaatacatctagatggaactcaggtttattgatgaaatgaatatcaaggaaaaccccgatttggcggagatgatgttgagcttttcctccaccaaaggct |
5338315 |
T |
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| Q |
107 |
cctccaacactcacaatggcagcaggctttccagcccaaacatttggtggtcttgatgcccaatcaattgcattctttag |
186 |
Q |
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| T |
5338316 |
cctccaacactcactatggcagcagttttaccagcccatacatttggtggtcttgatccccaatcaagtgcattctttag |
5338395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 29 - 186
Target Start/End: Complemental strand, 5344875 - 5344718
Alignment:
| Q |
29 |
ggtttattgatgaaatgaatatcaaggaaaaccccgatttggcagagatgatgctgtgcttttcctccaccaaaggctcctccaacactcacaatggcag |
128 |
Q |
| |
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|||||||| |||||||||| |||||||||||| |||||||| | |||||||| |||| |||| | |||||| |||||||| ||||||| ||||| | |
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| T |
5344875 |
ggtttatttatgaaatgaagatcaaggaaaactccgatttgtcggagatgatattgtgattttgcaccaccatgccctcctccagcactcactatggccg |
5344776 |
T |
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| Q |
129 |
caggctttccagcccaaacatttggtggtcttgatgcccaatcaattgcattctttag |
186 |
Q |
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|||| || ||||||||||||||||||| |||||||||||| |||| |||||||||||| |
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| T |
5344775 |
caggtttaccagcccaaacatttggtgatcttgatgcccagtcaagtgcattctttag |
5344718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 257 - 331
Target Start/End: Complemental strand, 5343881 - 5343807
Alignment:
| Q |
257 |
aacatgatgttgacttacctgagacagaataattatattcaggagaagcaaagagaacgctatcagctgcaagaa |
331 |
Q |
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||||||||||| || ||||||| ||||||||||||| |||||||||||||||||||| |||||||||| |||||| |
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| T |
5343881 |
aacatgatgtttacctacctgaaacagaataattattttcaggagaagcaaagagaaagctatcagctccaagaa |
5343807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 272 - 331
Target Start/End: Original strand, 5339413 - 5339472
Alignment:
| Q |
272 |
tacctgagacagaataattatattcaggagaagcaaagagaacgctatcagctgcaagaa |
331 |
Q |
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||||||||| ||||| ||||| |||||||||||||| |||| |||||||||| |||||| |
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| T |
5339413 |
tacctgagatggaatagttatactcaggagaagcaaatagaaagctatcagctccaagaa |
5339472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 137 - 183
Target Start/End: Original strand, 14535529 - 14535575
Alignment:
| Q |
137 |
ccagcccaaacatttggtggtcttgatgcccaatcaattgcattctt |
183 |
Q |
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| T |
14535529 |
ccagcccaaacatttggtggtctagatgcccaatcaattgcattctt |
14535575 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 272 - 324
Target Start/End: Original strand, 14536649 - 14536701
Alignment:
| Q |
272 |
tacctgagacagaataattatattcaggagaagcaaagagaacgctatcagct |
324 |
Q |
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|||||| |||||| || ||||| |||||||||||||| ||||| ||||||||| |
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| T |
14536649 |
tacctgtgacagagtagttatactcaggagaagcaaaaagaacactatcagct |
14536701 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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