View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9471_low_8 (Length: 298)
Name: NF9471_low_8
Description: NF9471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9471_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 6 - 282
Target Start/End: Complemental strand, 8445472 - 8445198
Alignment:
| Q |
6 |
agaagcagagataattcattgtttcccatcctcgttgaagacttgagggtaaaaacaaagacatttagcaagaaatagaggaattgttgaatccacagat |
105 |
Q |
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| T |
8445472 |
agaagcaaagataattcattgtttccgatcctcgttgaagacttgagggtaaaaacaaagacatttagcaagaaatagaggaattgttgaatccacagat |
8445373 |
T |
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| Q |
106 |
ccccctctccaagtgctgaaagaaacgccaatgggcagagagataaaaagagattggtttgtgtaatataagagaagaatgaatgaataatatttagata |
205 |
Q |
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| T |
8445372 |
ccccctctccaagtgctgaaagaaacgccaatgggcagagagataaaaagagattggtttgtgta--ataagagaagaatgaatgaataatatttagata |
8445275 |
T |
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| Q |
206 |
tgaaagtaatgtttatgtttatgatagtattattagagatgatagaattgagtttgggacgtgtcaagtacagatag |
282 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8445274 |
tgaaagtaatgtttatgtttatgagagtattattagagatgatagaattgagtttgggacgtgtcaagtacagatag |
8445198 |
T |
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