View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9471_low_9 (Length: 263)
Name: NF9471_low_9
Description: NF9471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9471_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 40812673 - 40812421
Alignment:
| Q |
1 |
cgtatccataatttacaggtccaatatccagaaggaaatgggttaccaatgtgtctttctacaatttaaattccacaaattatnnnnnnnnnntattcca |
100 |
Q |
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| T |
40812673 |
cgtatccataatttacaggtccaatatccagaaggaaatgggttacaaatgtgtctttctaatatttaaattccacaaattataaaaaaaaaatattcca |
40812574 |
T |
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| Q |
101 |
taaggattttcaaataagtattttttattccatgtcctggttaggtcaaacaaannnnnnnnngctgatatttctaaagtttcttctactcttcgcagtt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
40812573 |
taaggattttcaaataagtattttttattccatgtcctggttaggtgaaacaattgtttttttgctgatatttctaaagtttcttctactcttcgcagtt |
40812474 |
T |
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| Q |
201 |
agtttccttgcgatctttcttttttaggcctatgcccctcatgaactccaaac |
253 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
40812473 |
agtttccttgcgatctttcttttttaggcttatgcccctcatgaactccaaac |
40812421 |
T |
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