View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9472_high_2 (Length: 407)
Name: NF9472_high_2
Description: NF9472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9472_high_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 134; Significance: 1e-69; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 6582008 - 6581813
Alignment:
| Q |
1 |
gtatgtgtggttttgctctctctgattttctctattcaaatttacattgtttcaattattaagtctctttgttgtttctcttttttgtttaaaactttca |
100 |
Q |
| |
|
||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
6582008 |
gtatgtggggttttgatctctctgattttctctattcaaatttacattgtttcaatta---agtctctttctcgtttctcttttttgtttaaaactttca |
6581912 |
T |
|
| Q |
101 |
aattctcataatctattaaataaaactacaatttgaattgattgaatattgaaaatattatttcactcaaaaatcaccaactaagctatcaaactgaact |
200 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| |||| | |||||||||||||||||||||||||||||| |||||||||||| ||||||| |||||| |
|
|
| T |
6581911 |
aattctcataatctattaac-aaaactacaatttaaattaactgaatattgaaaatattatttcactcaaaactcaccaactaagttatcaaattgaact |
6581813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 58 - 147
Target Start/End: Complemental strand, 6758091 - 6758002
Alignment:
| Q |
58 |
attaagtctctttgttgtttctcttttttgtttaaaactttcaaattctcataatctattaaataaaactacaatttgaattgattgaat |
147 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |
|
|
| T |
6758091 |
attaagtctctttgttgtttttcttttttgtttaaaactttcaaattctcataatctattaaaaagaactacaatttgaattgattgaat |
6758002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 58 - 147
Target Start/End: Complemental strand, 6660182 - 6660093
Alignment:
| Q |
58 |
attaagtctctttgttgtttctcttttttgtttaaaactttcaaattctcataatctattaaataaaactacaatttgaattgattgaat |
147 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||||||||||| |
|
|
| T |
6660182 |
attaagtctctttgttgtttttcttttttgtttaaaactttcaaattctcataatttattaaaaagaactacaatttgaattgattgaat |
6660093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 58 - 147
Target Start/End: Complemental strand, 6740584 - 6740495
Alignment:
| Q |
58 |
attaagtctctttgttgtttctcttttttgtttaaaactttcaaattctcataatctattaaataaaactacaatttgaattgattgaat |
147 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||||||||||| |
|
|
| T |
6740584 |
attaagtctctttgttgtttttcttttttgtttaaaactttcaaattctcataatttattaaaaagaactacaatttgaattgattgaat |
6740495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 6758174 - 6758105
Alignment:
| Q |
1 |
gtatgtgtggttttgctctctctgattttctctattcaaatttacattgtttcaattattaagtctctttgtt |
73 |
Q |
| |
|
||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
6758174 |
gtatgtggggttttgatctctctgattttctctattcaaatttacattgtttca---attaagtctctttgtt |
6758105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 6660265 - 6660196
Alignment:
| Q |
1 |
gtatgtgtggttttgctctctctgattttctctattcaaatttacattgtttcaattattaagtctctttgtt |
73 |
Q |
| |
|
||||||| ||||||| ||||||||||||||||||||||||||||||| |||||| |||||||||||||||| |
|
|
| T |
6660265 |
gtatgtggggttttgatctctctgattttctctattcaaatttacatagtttca---attaagtctctttgtt |
6660196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 6740667 - 6740598
Alignment:
| Q |
1 |
gtatgtgtggttttgctctctctgattttctctattcaaatttacattgtttcaattattaagtctctttgtt |
73 |
Q |
| |
|
||||||| ||||||| ||||||||||||||||||||||||||||||| |||||| |||||||||||||||| |
|
|
| T |
6740667 |
gtatgtggggttttgatctctctgattttctctattcaaatttacatagtttca---attaagtctctttgtt |
6740598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 283 - 353
Target Start/End: Complemental strand, 6581675 - 6581606
Alignment:
| Q |
283 |
aattggaaaacatctaattctacgctggcccacttaataattgtaacaaagcac--tgaccacataattatat |
353 |
Q |
| |
|
||||||||||||||||||||||| ||| |||||| ||||||||||||||||| || |||||||||||||| |
|
|
| T |
6581675 |
aattggaaaacatctaattctactctgacccact---taattgtaacaaagcactgtgtccacataattatat |
6581606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University