View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9472_high_3 (Length: 405)

Name: NF9472_high_3
Description: NF9472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9472_high_3
NF9472_high_3
[»] chr6 (8 HSPs)
chr6 (4-405)||(27926069-27926470)
chr6 (285-402)||(28087414-28087531)
chr6 (269-402)||(28027503-28027638)
chr6 (85-239)||(28087545-28087699)
chr6 (285-405)||(27907217-27907337)
chr6 (299-396)||(28056780-28056877)
chr6 (291-403)||(27996423-27996535)
chr6 (291-353)||(28012829-28012891)
[»] chr5 (2 HSPs)
chr5 (42-402)||(1436058-1436424)
chr5 (5-38)||(17298756-17298789)
[»] chr8 (1 HSPs)
chr8 (5-38)||(14983778-14983811)


Alignment Details
Target: chr6 (Bit Score: 330; Significance: 0; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 4 - 405
Target Start/End: Original strand, 27926069 - 27926470
Alignment:
Q  4 attatgtaaatgtcataagttattatcatagtgatgagtaatttgctccatatgaccccagggaatgtggtaggaaaacgatatcattatctgcaagtat 103  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27926069 attatgtaaatgtcataggttattatcatagtgatgagtaatttgctccatatgaccccagggaatgtggtaggaaaacgatatcattatctgcaagtat 27926168  T
Q  104 ttcacaacatatatcataaacctgtagtctttttcacagattaaaatccctttccttccatgtcaaatacatgttgccagtcacttgttcaattccacaa 203  Q
    |||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  27926169 ttcacaacatatatcataaacctgtactctttttcacaggttaaaatccctttccttccatgtcaaatacatgttgccagtcacttgttcaattccacat 27926268  T
Q  204 actatttattaagacattggcataacaccgaggtaatttgcacaaaaacattgaaatgtaatgacatgtattggtgtcgaccaacaaggagagataggaa 303  Q
    |||||||||||||| |||| ||||||||||| | |||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  27926269 actatttattaagaaattgacataacaccgatgcaatttgcacagaaacattgaaatgtaattacatgtattggtgtcgaccaacaaggagagataggaa 27926368  T
Q  304 gaaatatacctgaggaacaggtgatacaacaaataagtcaaagagaaagtagctcttaaagtaattaacagctattttcttgggatggtcaaccaaatct 403  Q
    ||||||||||||||||| ||||||||||||| ||| ||| |||| ||| |||||||||||||||||| ||| ||||||||||||||||||||||||||||    
T  27926369 gaaatatacctgaggaagaggtgatacaacagatacgtcgaagaaaaaatagctcttaaagtaattagcagttattttcttgggatggtcaaccaaatct 27926468  T
Q  404 cc 405  Q
    ||    
T  27926469 cc 27926470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 285 - 402
Target Start/End: Complemental strand, 28087531 - 28087414
Alignment:
Q  285 caacaaggagagataggaagaaatatacctgaggaacaggtgatacaacaaataagtcaaagagaaagtagctcttaaagtaattaacagctattttctt 384  Q
    ||||| ||||||||||||||| |||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  28087531 caacatggagagataggaagatatatacctgaggaagaggtgatacaacaaataagtcgaagagaaagtagctcttaaagtaattaacagctattttctt 28087432  T
Q  385 gggatggtcaaccaaatc 402  Q
    |||||||||||| |||||    
T  28087431 gggatggtcaactaaatc 28087414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 269 - 402
Target Start/End: Complemental strand, 28027638 - 28027503
Alignment:
Q  269 atgtattggtgtcgaccaacaa--ggagagataggaagaaatatacctgaggaacaggtgatacaacaaataagtcaaagagaaagtagctcttaaagta 366  Q
    ||||||||||||||||||||||  ||||||||||||||| |||||||||||||| |||| |||||||||||| ||||||||  |||||||||||||||||    
T  28027638 atgtattggtgtcgaccaacaaatggagagataggaagacatatacctgaggaagaggtaatacaacaaatacgtcaaagaataagtagctcttaaagta 28027539  T
Q  367 attaacagctattttcttgggatggtcaaccaaatc 402  Q
    |||| ||||||||||||||||||||| ||| |||||    
T  28027538 attagcagctattttcttgggatggtaaactaaatc 28027503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 85 - 239
Target Start/End: Complemental strand, 28087699 - 28087545
Alignment:
Q  85 tatcattatctgcaagtatttcacaacatatatcataaacctgtagtctttttcacagattaaaatccctttccttccatgtcaaatacatgttgccagt 184  Q
    ||||||||||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||||| |||||||||||| | | ||      
T  28087699 tatcattatctgcaaatatttcacaacatacatcataaacttgtagtctttttcacagattaaaatcccttttcttccgtgtcaaatacatatcgtcaaa 28087600  T
Q  185 cacttgttcaattccacaaactatttattaagacattggcataacaccgaggtaa 239  Q
    ||||| |||||||||||  ||||||||||||| |||   || |||||||||||||    
T  28087599 cacttattcaattccacgtactatttattaaggcatcaacacaacaccgaggtaa 28087545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 285 - 405
Target Start/End: Complemental strand, 27907337 - 27907217
Alignment:
Q  285 caacaaggagagataggaagaaatatacctgaggaacaggtgatacaacaaataagtcaaagagaaagtagctcttaaagtaattaacagctattttctt 384  Q
    ||||| ||||||||| |||||||||||||||||||| ||||||| || ||| |||||| |||| ||||||  |||||| |||||||| ||| ||||||||    
T  27907337 caacatggagagataagaagaaatatacctgaggaagaggtgatgcagcaagtaagtcgaagaaaaagtaattcttaaggtaattaagagcaattttctt 27907238  T
Q  385 gggatggtcaaccaaatctcc 405  Q
     |||| |||||| || |||||    
T  27907237 aggattgtcaactaactctcc 27907217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 299 - 396
Target Start/End: Complemental strand, 28056877 - 28056780
Alignment:
Q  299 aggaagaaatatacctgaggaacaggtgatacaacaaataagtcaaagagaaagtagctcttaaagtaattaacagctattttcttgggatggtcaac 396  Q
    |||||||||||||||||||||| ||||||| ||||||||| ||| |||| ||| ||  |||||| ||| ||||||||||||||| | |||||||||||    
T  28056877 aggaagaaatatacctgaggaagaggtgatccaacaaatacgtcgaagaaaaaataagtcttaaggtatttaacagctattttccttggatggtcaac 28056780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 291 - 403
Target Start/End: Complemental strand, 27996535 - 27996423
Alignment:
Q  291 ggagagataggaagaaatatacctgaggaacaggtgatacaacaaataagtcaaagagaaagtagctcttaaagtaattaacagctattttcttgggatg 390  Q
    |||||||| |||| |||||||||||||||| ||||||| ||||||||||||| |  | |||||| | ||| ||||| |||  ||| ||| || |||||||    
T  27996535 ggagagatgggaataaatatacctgaggaagaggtgatgcaacaaataagtcgataaaaaagtaacccttcaagtagttatgagcaattctcgtgggatg 27996436  T
Q  391 gtcaaccaaatct 403  Q
    |||||| ||||||    
T  27996435 gtcaactaaatct 27996423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 291 - 353
Target Start/End: Complemental strand, 28012891 - 28012829
Alignment:
Q  291 ggagagataggaagaaatatacctgaggaacaggtgatacaacaaataagtcaaagagaaagt 353  Q
    |||| ||||||||||||| ||||||||||| |||| || ||| ||| ||||||| ||||||||    
T  28012891 ggagcgataggaagaaatgtacctgaggaagaggtaatgcaataaagaagtcaatgagaaagt 28012829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 153; Significance: 6e-81; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 42 - 402
Target Start/End: Complemental strand, 1436424 - 1436058
Alignment:
Q  42 taatttgctccatatgaccccagggaatgtggtagga-aaacgatatcattatctgcaagtatttcacaacatatatcataaacctgtagtctttttcac 140  Q
    |||||||||||  ||||||||| ||||| |||||||| ||||  ||||||||||||||| |||||||||||||| |||||||||   ||||||||| |||    
T  1436424 taatttgctcctgatgaccccaaggaatttggtaggataaacattatcattatctgcaaatatttcacaacatacatcataaactcatagtcttttacac 1436325  T
Q  141 agattaaaatccctttccttccatgtcaaatacatgttgccagtcacttgttcaattccacaaactatttattaagacattggcataacaccgaggtaat 240  Q
    |||||||||||||||| ||||  |||||| ||||| | | ||  |||||||||||||||||| | ||||||||||| |||   | | ||||||||||||     
T  1436324 agattaaaatcccttttcttctgtgtcaactacatatcgtcaagcacttgttcaattccacacattatttattaaggcatcaacgtgacaccgaggtaac 1436225  T
Q  241 ttgcacaaaaac-attgaaatgt-aatgacatgtattggtgtcgaccaacaa---ggagagataggaagaaatatacctgaggaacaggtgatacaacaa 335  Q
     |||||| |||  |||||||||| ||| |||||| | |||||| || |||||   ||||||||||||||| |||||||||||||| ||||||||||||||    
T  1436224 atgcacagaaagtattgaaatgttaatcacatgtgtcggtgtcaacaaacaacatggagagataggaagatatatacctgaggaataggtgatacaacaa 1436125  T
Q  336 ataagtcaaagagaaagtagctcttaaagtaattaacagctattttcttgggatggtcaaccaaatc 402  Q
    ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| || |||||    
T  1436124 ataagtccaagaaaaagtagctcttaaagtaattaacagctattttcttgggatggtcgactaaatc 1436058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 38
Target Start/End: Complemental strand, 17298789 - 17298756
Alignment:
Q  5 ttatgtaaatgtcataagttattatcatagtgat 38  Q
    ||||||||||||||||||||||| ||||||||||    
T  17298789 ttatgtaaatgtcataagttattctcatagtgat 17298756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 38
Target Start/End: Complemental strand, 14983811 - 14983778
Alignment:
Q  5 ttatgtaaatgtcataagttattatcatagtgat 38  Q
    ||||||||||||||||||||||| ||||||||||    
T  14983811 ttatgtaaatgtcataagttattctcatagtgat 14983778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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