View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9472_high_4 (Length: 397)
Name: NF9472_high_4
Description: NF9472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9472_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 23 - 393
Target Start/End: Complemental strand, 50088104 - 50087734
Alignment:
| Q |
23 |
tggtcttggtgaagaaacatgtttaccaccttcaattcattatattccaccaaaaccaaccatggaatcagcaagaggtgaagctgaacttgttattttc |
122 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50088104 |
tggtcttggtgaagaaacatgtttaccaccttcaattcattatattccaccaaaaccaaccatggaatcagcaagaggtgaagctgaacttgttattttc |
50088005 |
T |
|
| Q |
123 |
tcagccatggattctttgtttgaaaaaaccggtcttaaaccaaaagacatagacatactcatagtaaattgtagcttgttttctccaacaccttctttgt |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50088004 |
tcagccatggattctttgtttgaaaaaaccggtcttaaaccaaaagacatagacatactcatagtaaattgtagcttgttttctccaacaccttctttgt |
50087905 |
T |
|
| Q |
223 |
ctgctatggtgattaacaaatacaaactaagaagcaatatcagaagttttaatctttctggaatggggtgtagtgctggactcatttcgatagatttagc |
322 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50087904 |
ctgctatggtgattaacaaatacaaactaagaagcaatatcagaagtttcaatctttctggaatggggtgtagtgctggactcatttcgatagatttagc |
50087805 |
T |
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| Q |
323 |
tcgtgatcttcttcaagttcatccaaattcaaatgctattgttgttagcacagagattataacaccaaact |
393 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
50087804 |
tcgtgatcttcttcaagttcatccaaattcaaatgctgttgttgttagcacagagattataacaccaaact |
50087734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 107; Significance: 2e-53; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 23 - 393
Target Start/End: Complemental strand, 23272365 - 23271995
Alignment:
| Q |
23 |
tggtcttggtgaagaaacatgtttaccaccttcaattcattatattccaccaaaaccaaccatggaatcagcaagaggtgaagctgaacttgttattttc |
122 |
Q |
| |
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||||||||| |||||||||||||| ||||| |||| ||||| || ||||| |||||||| |||||| ||||||| | ||||| || |||||||||||| |
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| T |
23272365 |
tggtcttggcgaagaaacatgtttgccaccagcaatacattacatcccacctaaaccaacaatggaagaagcaagacgcgaagccgagcttgttattttc |
23272266 |
T |
|
| Q |
123 |
tcagccatggattctttgtttgaaaaaaccggtcttaaaccaaaagacatagacatactcatagtaaattgtagcttgttttctccaacaccttctttgt |
222 |
Q |
| |
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||| |||||||| | || |||| || ||||| || ||||| || ||||||||||| || ||||| ||||| ||| | ||||||||||| |||||||||| |
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| T |
23272265 |
tcatccatggataccttatttgcgaagaccggactcaaacctaaggacatagacattcttatagtcaattgcagcctcttttctccaactccttctttgt |
23272166 |
T |
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| Q |
223 |
ctgctatggtgattaacaaatacaaactaagaagcaatatcagaagttttaatctttctggaatggggtgtagtgctggactcatttcgatagatttagc |
322 |
Q |
| |
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|||||||||| || |||||||||||||| |||||||| |||| || || || || || |||||||| || || || || | || || || |||||||| |
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| T |
23272165 |
ctgctatggtaatcaacaaatacaaacttagaagcaacatcaagagcttcaacctctccggaatgggatgcagcgcaggtttaatctccatcgatttagc |
23272066 |
T |
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| Q |
323 |
tcgtgatcttcttcaagttcatccaaattcaaatgctattgttgttagcacagagattataacaccaaact |
393 |
Q |
| |
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||| ||||||||||| ||| |||| |||||||| || ||||||| |||||||| || || || ||||||| |
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| T |
23272065 |
tcgcgatcttcttcaggtttatccgaattcaaacgcagttgttgtgagcacagaaatcattactccaaact |
23271995 |
T |
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