View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9472_low_10 (Length: 382)
Name: NF9472_low_10
Description: NF9472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9472_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 336; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 19 - 375
Target Start/End: Original strand, 37914520 - 37914876
Alignment:
| Q |
19 |
gagacatattttcaagttcaacttactcttttctcatctcatttcaaaacaatacaacaacatgagcaacacaaacatgcttcatcatcacgagatcaaa |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37914520 |
gagacatattttcaagttcaacttactcttttctcatctcatttcaaaacaatacaacaacatgagcaacacaaacatgcttcatcatcacgagatcaaa |
37914619 |
T |
|
| Q |
119 |
ttctatcataacgaaacagtaattatgaaggtgatagagcagactcaaatttcaccaccaccaagttcacttccatcaccaacgagaatccctctcactt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37914620 |
ttctatcataacgaaacagtaattatgaaggtgatagagcagactcaaatttcaccaccaccaagttcacttccatcaccaacgagaatccctctcactt |
37914719 |
T |
|
| Q |
219 |
tctttgacatttcttggttttactgcaaannnnnnnttaaacgcatcttcttctaccactttcctcacccaactcatcacttcctccaaacaacacttcc |
318 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37914720 |
tctttgacatttcttggttttactgcaaacccccccttaaacgcatcttcttctaccactttcctcacccaactcatcacttcctccaaacaacacttcc |
37914819 |
T |
|
| Q |
319 |
tattctcaaacactcactttccttaacccttcaacacttctttcccttcacctccaa |
375 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37914820 |
tattctcaaacactcactttccttaacccttcaacacttctttcccttcacctccaa |
37914876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 108 - 375
Target Start/End: Original strand, 37906446 - 37906713
Alignment:
| Q |
108 |
acgagatcaaattctatcataacgaaacagtaattatgaaggtgatagagcagactcaaatttcaccaccaccaagttcacttccatcaccaacgagaat |
207 |
Q |
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|||||| ||||||| |||| ||| | ||||| || |||||||| ||||| || | ||| || |||||||||||| |||||||||||||||||| | | | |
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| T |
37906446 |
acgagaccaaattcaatcacaacaacacagttatgatgaaggtaatagaacatagccaagttgcaccaccaccaaattcacttccatcaccaacaacact |
37906545 |
T |
|
| Q |
208 |
ccctctcactttctttgacatttcttggttttactgcaaannnnnnnttaaacgcatcttcttctaccactttcctcacccaactcatcacttcctccaa |
307 |
Q |
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||||||||| ||||| |||||||| ||||||||||| || ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37906546 |
ccctctcaccttcttcgacatttcatggttttactgtcaacccactgttaaacgtatcttcttctaccactttcctcacccaactcatcacttcctccaa |
37906645 |
T |
|
| Q |
308 |
acaacacttcctattctcaaacactcactttccttaacccttcaacacttctttcccttcacctccaa |
375 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37906646 |
acaacacttcctattctcaaacactcactttccttaacccttcaacacttctttcccttcacctccaa |
37906713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 258 - 360
Target Start/End: Complemental strand, 37961472 - 37961370
Alignment:
| Q |
258 |
aacgcatcttcttctaccactttcctcacccaactcatcacttcctccaaacaacacttcctattctcaaacactcactttccttaacccttcaacactt |
357 |
Q |
| |
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|||| |||||||||||||| |||||||| ||||||||||| ||||| |||||||||||||| ||||||||||||||||||||| ||||||| | |||||| |
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| T |
37961472 |
aacgtatcttcttctaccattttcctcatccaactcatcatttccttcaaacaacacttcccattctcaaacactcactttccataaccctcctacactt |
37961373 |
T |
|
| Q |
358 |
ctt |
360 |
Q |
| |
|
||| |
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|
| T |
37961372 |
ctt |
37961370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 201
Target Start/End: Complemental strand, 37961584 - 37961526
Alignment:
| Q |
143 |
atgaaggtgatagagcagactcaaatttcaccaccaccaagttcacttccatcaccaac |
201 |
Q |
| |
|
|||||||||||||| || | |||| || |||||||||||| ||||||| |||||||||| |
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|
| T |
37961584 |
atgaaggtgatagaacatagtcaagttgcaccaccaccaaattcacttacatcaccaac |
37961526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 255 - 363
Target Start/End: Original strand, 3782862 - 3782970
Alignment:
| Q |
255 |
ttaaacgcatcttcttctaccactttcctcacccaactcatcacttcctccaaacaacacttcctattctcaaacactcactttccttaacccttcaaca |
354 |
Q |
| |
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||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |||||| |||||||||||||| |||||| | ||||| |||| |
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| T |
3782862 |
ttaaacgcatcttcttctaccactttcctcatccaactcatcactttctccaaacaatacttcccattctcaaacactctctttccatcaccctcgaaca |
3782961 |
T |
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| Q |
355 |
cttctttcc |
363 |
Q |
| |
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||||||||| |
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| T |
3782962 |
cttctttcc |
3782970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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