View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9472_low_12 (Length: 367)
Name: NF9472_low_12
Description: NF9472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9472_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 18 - 351
Target Start/End: Complemental strand, 12814054 - 12813721
Alignment:
| Q |
18 |
cagagactacccgtaagtttgagtcatgtgagcagcaatatcaaatcattgacgacaagtatgccatataaggagtatgaaaagtgcaattcaaaggatt |
117 |
Q |
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| T |
12814054 |
cagagactacccgtaagtttgagtcatgtgagcagcaatatcaaataattgacggtaagtatgccatataaggagtatgaaaagtgcaattcaaaggatt |
12813955 |
T |
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| Q |
118 |
cgtaaaataaaataaagagaactgaaaatttgaggaatgttgtaatacatattagatttgcagagcatgattagattataagtacctatcagtttctata |
217 |
Q |
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| T |
12813954 |
cgtaaaataaaataaagagaactgaaaatttgaggaatgttgtaatacataatagatttgcagagcatgattagattataagtacctatcagtttctata |
12813855 |
T |
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| Q |
218 |
aagagggcgttttgtttttcaacacgttctaaccatgcactatatatgacctttgtcaaaattttcttagaagaaggagtgagagggttaatatttcatg |
317 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12813854 |
aagggggcgttttgtttttcaacacgttctaaccatgcactatatatgacctttgtcaaaattttcttagaagaaggagtgagagggttaatatttcatg |
12813755 |
T |
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| Q |
318 |
acattgatccnnnnnnntattttatgtttagaag |
351 |
Q |
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|||||||||| ||||||||||||||||| |
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| T |
12813754 |
acattgatccaaaaaaatattttatgtttagaag |
12813721 |
T |
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