View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9472_low_16 (Length: 305)
Name: NF9472_low_16
Description: NF9472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9472_low_16 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 17 - 301
Target Start/End: Complemental strand, 48324512 - 48324227
Alignment:
| Q |
17 |
aatcaaacaccaaagattgcctttatgtttttgacaaaaggtcccgtcttgttggctcctttttgggataaattcttcaaaggaaatgaagggatgtatt |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
48324512 |
aatcaaacaccaaagattgcctttatgtttttgacaaaaggtcccgtcttgttagctcctttttgggagaaattcttcaaaggaaatgaagggatgtatt |
48324413 |
T |
|
| Q |
117 |
caatctacattcatccaagtccatctttcaatcaaactgtttacagtgaaagatctgtgtttcatggccgaagaatctcaagcaaggtacacattcaaag |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
48324412 |
caatctacattcatccaagtccatctttcaatcaaacggtttacaatgaaagatctgtgtttcatggccgaagaatcccaagcaaggtacacattcaaag |
48324313 |
T |
|
| Q |
217 |
attctcttttccttgagactttgttatttttatgtctcacaa-aaaacatacaattgtagcggtatttgtcatgtctctgcttctc |
301 |
Q |
| |
|
|| ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| ||||| |
|
|
| T |
48324312 |
atcctctttttcttgagactttgttatttttatgtctcacaaaaaaacatacaattgtagcggtatttgtcatgtttctgattctc |
48324227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 20 - 206
Target Start/End: Complemental strand, 31269171 - 31268985
Alignment:
| Q |
20 |
caaacaccaaagattgcctttatgtttttgacaaaaggtcccgtcttgttggctcctttttgggataaattcttcaaaggaaatgaagggatgtattcaa |
119 |
Q |
| |
|
|||| ||||||| |||| |||||||||||||| ||||| | || || ||||||||||| ||||| |||||||||||||||||||||||| ||||||| | |
|
|
| T |
31269171 |
caaataccaaaggttgcatttatgtttttgaccaaaggacatgttttattggctcctttgtgggagaaattcttcaaaggaaatgaagggttgtattcta |
31269072 |
T |
|
| Q |
120 |
tctacattcatccaagtccatctttcaatcaaactgtttacagtgaaagatctgtgtttcatggccgaagaatctcaagcaaggtac |
206 |
Q |
| |
|
||||||||||||||| ||| ||||||||| |||| ||||| | |||| || || |||||||||||||||||| |||||||||||| |
|
|
| T |
31269071 |
tctacattcatccaaatccttctttcaatgaaacggtttatgatcaaagctcagtctttcatggccgaagaatcccaagcaaggtac |
31268985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 79; Significance: 6e-37; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 20 - 214
Target Start/End: Original strand, 1136224 - 1136418
Alignment:
| Q |
20 |
caaacaccaaagattgcctttatgtttttgacaaaaggtcccgtcttgttggctcctttttgggataaattcttcaaaggaaatgaagggatgtattcaa |
119 |
Q |
| |
|
|||||||||||| |||| || ||||| |||||||||||||| || ||||| ||||| ||||||| ||||||||||||||||| |||||| ||||||| | |
|
|
| T |
1136224 |
caaacaccaaaggttgcattcatgttcttgacaaaaggtcctgttttgttagctccgctttgggagaaattcttcaaaggaaacgaagggttgtattcga |
1136323 |
T |
|
| Q |
120 |
tctacattcatccaagtccatctttcaatcaaactgtttacagtgaaagatctgtgtttcatggccgaagaatctcaagcaaggtacacattcaa |
214 |
Q |
| |
|
||||| ||||||| || || || |||||| |||| ||||| | | |||| | ||||||||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
1136324 |
tctacgttcatcctagcccttccttcaatgaaaccgtttataatcaaagcttagtgtttcatggccgaagaatcccaagcaaggtatgcattcaa |
1136418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 20 - 205
Target Start/End: Original strand, 1139435 - 1139620
Alignment:
| Q |
20 |
caaacaccaaagattgcctttatgtttttgacaaaaggtcccgtcttgttggctcctttttgggataaattcttcaaaggaaatgaagggatgtattcaa |
119 |
Q |
| |
|
|||||||||||| |||| || ||||| |||||||||||||| | ||||||||||| ||||||| |||||||| |||||||| |||||| ||||||| | |
|
|
| T |
1139435 |
caaacaccaaaggttgcattcatgttcttgacaaaaggtcctattttgttggctccgctttgggagaaattctttaaaggaaacgaagggttgtattcga |
1139534 |
T |
|
| Q |
120 |
tctacattcatccaagtccatctttcaatcaaactgtttacagtgaaagatctgtgtttcatggccgaagaatctcaagcaaggta |
205 |
Q |
| |
|
||||| ||||||| ||||| || |||||| |||| ||||| | | |||| || |||||| |||||||||||||| ||||||||||| |
|
|
| T |
1139535 |
tctacgttcatcctagtccttccttcaatgaaacagtttataatcaaagctcagtgttttatggccgaagaatcccaagcaaggta |
1139620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 79; Significance: 6e-37; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 20 - 229
Target Start/End: Complemental strand, 54479302 - 54479092
Alignment:
| Q |
20 |
caaacaccaaagattgcctttatgtttttgacaaaaggtcccgtcttgttggctcctttttgggataaattcttcaaaggaaatgaagggatgtattcaa |
119 |
Q |
| |
|
|||||||||||| |||| |||||||| ||||||| |||||| || ||||||||||| ||||||| |||||||||||||||||||||||| | ||||| | |
|
|
| T |
54479302 |
caaacaccaaaggttgcgtttatgttcttgacaataggtcctgttttgttggctccactttgggagaaattcttcaaaggaaatgaagggttatattcta |
54479203 |
T |
|
| Q |
120 |
tctacattcatccaagtccatctttcaatcaaactgtttacagtgaaagatctgtgtttcatggccgaagaatctcaagcaaggtacacattc-aaagat |
218 |
Q |
| |
|
||||||| ||||| | ||| ||||||||| ||| ||||| | | |||| || |||||||||| ||||||||| ||||||||||| |||| ||| || |
|
|
| T |
54479202 |
tctacatacatcctaatccttctttcaatgaaatggtttatactcaaagctcagtgtttcatgatcgaagaatcccaagcaaggtatcaattcaaaatat |
54479103 |
T |
|
| Q |
219 |
tctcttttcct |
229 |
Q |
| |
|
||||||||||| |
|
|
| T |
54479102 |
tctcttttcct |
54479092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University