View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9472_low_17 (Length: 300)
Name: NF9472_low_17
Description: NF9472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9472_low_17 |
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| [»] scaffold0649 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 168; Significance: 5e-90; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 1 - 287
Target Start/End: Original strand, 20980285 - 20980574
Alignment:
| Q |
1 |
tggagaattattcaaagattccctctgcttccttttcgatgtact---acaaatacaaatgaatgggatcaaaatggtggtgtctatttgtgtaatagtc |
97 |
Q |
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| T |
20980285 |
tggagaattattcaaagattccctctgcttccttttcgatgtactcgtacgaatacaaatgaatgggatcgaaatggtggtgtctatttgtgtaatagtc |
20980384 |
T |
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| Q |
98 |
ttaattggtttgccattcgcagcaataacgttggttataatgaatggaaggatcttaatgttaccgttgagcaatttgtgatcatttcccttgatttggc |
197 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| | || |||||||||| |
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| T |
20980385 |
ttaattggtttgccattcgcagcaataacgttggttataatgaatggaaggatcttaatcttagtattgagcaatttgtgattacctctcttgatttggg |
20980484 |
T |
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| Q |
198 |
tacagagacctacacacaattgcttcctcctcggggtttcaatgaagtgccacatgttatgccagcagtttctgttttgatgcattgtct |
287 |
Q |
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| T |
20980485 |
gacagactcgtacacacagttgctgcctcctcggggattcgatgaagtaccgcctgttatgccaattgtttctgtgttgatggattgtct |
20980574 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 110 - 293
Target Start/End: Original strand, 20967493 - 20967676
Alignment:
| Q |
110 |
ccattcgcagcaataacgttggttataatgaatggaaggatcttaatgttaccgttgagcaatttgtgatcatttcccttgatttggctacagagaccta |
209 |
Q |
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| T |
20967493 |
ccattcgcagcaataacgttggttataatgaatggaaggatcttaatgttactgttgagcaatttgtgatcatttcccttgatttggggacagagaccta |
20967592 |
T |
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| Q |
210 |
cacacaattgcttcctcctcggggtttcaatgaagtgccacatgttatgccagcagtttctgttttgatgcattgtctctgctt |
293 |
Q |
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| T |
20967593 |
cacacaattgcttcctcctcggggtttcaatgaagtgccacatgttatgccggtagtttctgttttgatgcattgtctttgctt |
20967676 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 164 - 261
Target Start/End: Complemental strand, 20699663 - 20699566
Alignment:
| Q |
164 |
ttgagcaatttgtgatcatttcccttgatttggctacagagacctacacacaattgcttcctcctcggggtttcaatgaagtgccacatgttatgcca |
261 |
Q |
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| T |
20699663 |
ttgatcaatttgtgattatctcacttgatttgggaacagagacttacacgcaaatgctccctcctcgagattttgatgaagtgccactttttatgcca |
20699566 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 20967462 - 20967491
Alignment:
| Q |
1 |
tggagaattattcaaagattccctctgctt |
30 |
Q |
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| T |
20967462 |
tggagaattattcaaagattccctctgctt |
20967491 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 164 - 248
Target Start/End: Original strand, 27618338 - 27618422
Alignment:
| Q |
164 |
ttgagcaatttgtgatcatttcccttgatttggctacagagacctacacacaattgcttcctcctcggggtttcaatgaagtgcc |
248 |
Q |
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| T |
27618338 |
ttgatcaatttgtgattatttcgcttgatttgagtactgagacacacacacagttgcttcctcctcggggtttcaatgaagtgcc |
27618422 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 158 - 249
Target Start/End: Complemental strand, 16839610 - 16839519
Alignment:
| Q |
158 |
ttaccgttgagcaatttgtgatcatttcccttgatttggctacagagacctacacacaattgcttcctcctcggggtttcaatgaagtgcca |
249 |
Q |
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| T |
16839610 |
ttactgttgagcaatttgtgattatttcacttgatttgggcacggagacatacaaatatttgcttccccctcgaggttttgttgaagtgcca |
16839519 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 158 - 249
Target Start/End: Complemental strand, 16846693 - 16846602
Alignment:
| Q |
158 |
ttaccgttgagcaatttgtgatcatttcccttgatttggctacagagacctacacacaattgcttcctcctcggggtttcaatgaagtgcca |
249 |
Q |
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| T |
16846693 |
ttactgttgagcaatttgtgattatttctcttgatttgggcacggagacatacaaatatttgcttccccctcgaggttttgttgaagtgcca |
16846602 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0649 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0649
Description:
Target: scaffold0649; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 108
Target Start/End: Original strand, 5181 - 5226
Alignment:
| Q |
63 |
ggatcaaaatggtggtgtctatttgtgtaatagtcttaattggttt |
108 |
Q |
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| T |
5181 |
ggatcagaatggtggtgtctattttagtaacagtcttaattggttt |
5226 |
T |
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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 211
Target Start/End: Original strand, 20770500 - 20770544
Alignment:
| Q |
167 |
agcaatttgtgatcatttcccttgatttggctacagagacctaca |
211 |
Q |
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| T |
20770500 |
agcaatttgtgatcatctcccttgatttggcgaaagagacataca |
20770544 |
T |
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