View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9472_low_18 (Length: 288)
Name: NF9472_low_18
Description: NF9472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9472_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 183; Significance: 5e-99; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 40545321 - 40545602
Alignment:
| Q |
1 |
aggtgaatggtgtcttgatcagattaaagtttacaagaaaagccttattccaatcaaaagaaatttattattctcctatagatagtttaactcatgattg |
100 |
Q |
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| T |
40545321 |
aggtgaatggtgtcttgatcagattaaagtttacaagaaaagccttattccaatcaaaagaaatttattattctcctatagatagttttactcatgattg |
40545420 |
T |
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| Q |
101 |
tggttattggcattttaccttttatagaaagtggtggtcaattgctaatatcaaaattattatcaag----tgaaagacacttactagttgactaggcca |
196 |
Q |
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| T |
40545421 |
tggttattgacattttaccttttatagaaagtggtgatcaattgctaatatcaaaactattatcaagtatttgaaagacactttctagttgactaggcca |
40545520 |
T |
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| Q |
197 |
tttgctttgctttgc--------nnnnnnnatattcttcattgtagtttccgaatcctgatatgttatcatttggatggata |
270 |
Q |
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| T |
40545521 |
tttgctttcctttcctttttttatgcatgcatattcttcattgtagtttcagaatcctgatatgttatcatttggatggata |
40545602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 85 - 270
Target Start/End: Original strand, 31789813 - 31790004
Alignment:
| Q |
85 |
gtttaactcatgattgtggttattggcattttaccttttatagaaagtggtg-gtcaattgctaatatcaaaattattatcaagt----gaaagacactt |
179 |
Q |
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| T |
31789813 |
gttttactcatgattgtggttattgacattttacctttcgtagaa-gtggcatgtcagttgctaatatcaaaattattatcaagtatttgaaagacacat |
31789911 |
T |
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| Q |
180 |
actagttgactaggccatttgctttgctttgcnnnnnnn--atattcttcattgtagtttccgaatcctgatatgttatcatttggatggata |
270 |
Q |
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| T |
31789912 |
tcttgttgcctaggccttttgctttccttttttatgcctgcatattctccattgtagtttcagaatccagatatgttatcatttggatggata |
31790004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 85 - 209
Target Start/End: Original strand, 32033165 - 32033297
Alignment:
| Q |
85 |
gtttaactcatgattgtggttattggcattttaccttttatagaaagtggtg-gtcaattgctaatatcaaaattatt----atcaagt----gaaagac |
175 |
Q |
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| T |
32033165 |
gttttactcatgattgtggttattgacgttttacctttcgtagaa-gtggcatgtcaattgctaatatcaaaattatttattatcaagtatttgaaagac |
32033263 |
T |
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| Q |
176 |
acttactagttgactaggccatttgctttgcttt |
209 |
Q |
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| T |
32033264 |
acattctagttgcctaggccatttgctttccttt |
32033297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 13 - 62
Target Start/End: Original strand, 5162668 - 5162717
Alignment:
| Q |
13 |
tcttgatcagattaaagtttacaagaaaagccttattccaatcaaaagaa |
62 |
Q |
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| T |
5162668 |
tcttggtcagattaaagtttacaagaaaagccttcttccaatcaaaagaa |
5162717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 219 - 270
Target Start/End: Original strand, 5162832 - 5162883
Alignment:
| Q |
219 |
atattcttcattgtagtttccgaatcctgatatgttatcatttggatggata |
270 |
Q |
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| T |
5162832 |
atattcttcattgtagtttcagaatcctgatatgttatcatttagatagata |
5162883 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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