View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9472_low_19 (Length: 267)
Name: NF9472_low_19
Description: NF9472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9472_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 11 - 251
Target Start/End: Complemental strand, 42875815 - 42875575
Alignment:
| Q |
11 |
caaaggtaaaggcagcagcatatgcggttgttccaacggcttattcttgtgttgtaacaaccggtacacatatggtagcggctattatgtttatgatccg |
110 |
Q |
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| T |
42875815 |
caaaggtaaaggcagcagcatatgcggttgttccaacggcttattcttgtgttgtaacaaccggtacacatatggtagcggctattatgtttatgatccg |
42875716 |
T |
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| Q |
111 |
cttgtgaaagggcgtatcgatatacctgatccttctcctcctttgacgtgtatcgaaaatttatatgccgtgggatttgtttgcaaaccgaagcagaagg |
210 |
Q |
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| T |
42875715 |
cttgtgaaagggcgtatcgatatacctgatccttctcctcctttgacgtgtatcgaaaatttatacgccgtgggatttgtttgcaaaccgaagcagaagg |
42875616 |
T |
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| Q |
211 |
tgaccgctcgtcgttcaaataaacacaattttcgagttgtg |
251 |
Q |
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| T |
42875615 |
tgaccgctcgtcgttcaaataaacacaattttcgagttgtg |
42875575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 27 - 141
Target Start/End: Original strand, 42751144 - 42751258
Alignment:
| Q |
27 |
agcatatgcggttgttccaacggcttattcttgtgttgtaacaaccggtacacatatggtagcggctattatgtttatgatccgcttgtgaaagggcgta |
126 |
Q |
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| T |
42751144 |
agcatatgtggttgttccaatggtttattcttgtgttctaagaatcgggacacatgtgctaccgtctattatgtttatgatccactcgttaaagagtgta |
42751243 |
T |
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| Q |
127 |
tcgatatacctgatc |
141 |
Q |
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| T |
42751244 |
tccatatacctgatc |
42751258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 31 - 119
Target Start/End: Complemental strand, 1050295 - 1050207
Alignment:
| Q |
31 |
tatgcggttgttccaacggcttattcttgtgttgtaacaaccggtacacatatggtagcggctattatgtttatgatccgcttgtgaaa |
119 |
Q |
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| T |
1050295 |
tatgcggttgttccaacggtttattcttgtgttgtaagaatcgatacacctatggtatcgactattatatttacgatccacttatgaaa |
1050207 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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