View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9472_low_3 (Length: 408)
Name: NF9472_low_3
Description: NF9472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9472_low_3 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 408
Target Start/End: Complemental strand, 51111915 - 51111511
Alignment:
| Q |
1 |
tctaaagactatgcaggtgatgctgctcaaaaaaccaaagaggcttctgaatatgccaatgacaccactcagaagacagcaaagtatggagctgatactg |
100 |
Q |
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| T |
51111915 |
tctaaagactatgcaggtgatgctgctcaaaaaaccaaagaggcttctgaatatgccaatgacaccactcagaagacagcaaagtatggagctgatactg |
51111816 |
T |
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| Q |
101 |
ctcagaaaaccaaaaataaaatccaagacgttgcatctggtttgtactgttcaaactctaattttgttactaacatttctagtatgcgcatggtaatata |
200 |
Q |
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| T |
51111815 |
ctcagaaaaccaaaaataaaatccaagacgttgcatctggtttgtactgttcaaactctaattttgttactaacatttctagtatgcgcatggtaatata |
51111716 |
T |
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| Q |
201 |
gggaagaaagaaa--gaa-------------aatatattttgttagc-ttttcttcctattatgataaaatatataaaagtctattagccaaaagtgctt |
284 |
Q |
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| T |
51111715 |
gggaagaaagaaaaccaaaagtgcttaaagcaaaatattttgttagctttttcttcctattatgataaaatatataaaagtctattagccaaaagtgctt |
51111616 |
T |
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| Q |
285 |
ataaagacattgtgccaaatatgccaaggaaaataaaatgaaatagctaatgtatgnnnnnnngataattatattgaggattgaatgtttgatgagcagg |
384 |
Q |
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| T |
51111615 |
atagaaacattgtgccaaatatgccaaggaaaataaaatgaaatagctaa-------------------tatattgaggattgaatgtttgatgagcagg |
51111535 |
T |
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| Q |
385 |
gacaggagaacacagtgcagagaa |
408 |
Q |
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| T |
51111534 |
gacaggagaacacagtgcagagaa |
51111511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 4 - 42
Target Start/End: Complemental strand, 51112491 - 51112453
Alignment:
| Q |
4 |
aaagactatgcaggtgatgctgctcaaaaaaccaaagag |
42 |
Q |
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| T |
51112491 |
aaagagtatgcaggtgatgctgcacaaaaaaccaaagag |
51112453 |
T |
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