View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9473_high_3 (Length: 427)
Name: NF9473_high_3
Description: NF9473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9473_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 6 - 411
Target Start/End: Original strand, 37582866 - 37583275
Alignment:
| Q |
6 |
ggaggagcagagaggcaacaaaatatactaccaccnnnnnnnnn-gtcaacagaaaaatgactagagtgtaagtgtttgatgtgcagcctgtgttgtaaa |
104 |
Q |
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||||||| | ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37582866 |
ggaggagtaaagaggcaacaaaatatactaccaccaaaaaaaaaagtcaacagaaaaatgactagagtgtaagtgtttgatgtgcagcctgtgttgtaaa |
37582965 |
T |
|
| Q |
105 |
ttttggttaccatgatcgacttttacatatgaaaaaaatcaacagnnnnnnnnnn---gactcaaccttgtaaagataataatgttgcaataaatgaatg |
201 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
37582966 |
ttttggttaccatgatcgacttttacatatgaaaaaaatcaacagaaaaaaaaaaaaagactcaaccttgtaaagataataatgttgcaataaatgaatg |
37583065 |
T |
|
| Q |
202 |
aatatacaagaaaacataataagggtacatatacatgctatgcatttgcaaaaagttgggagttggatttagtggaaatggttaaacttctacaatgtgg |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37583066 |
aatatacaagaaaacataataagggtacatatacatgctatgcatttgcaaaaagttgggagttggatttagtggaaatggttaaacttctacaatgtgg |
37583165 |
T |
|
| Q |
302 |
tgaattaatattcgaattttagctttgagagatgctcacatctagtgtctaacagtgtatcaaatataatgatctccagggaaagaaaccaatgaaaaac |
401 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37583166 |
tgaattaatattcgaattttagctttgagagatactcacatctagtgtctaacagtgtatcaaatataatgatctccagggaaagaaaccaatgaaaaac |
37583265 |
T |
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| Q |
402 |
taacaaattg |
411 |
Q |
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|||||||||| |
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| T |
37583266 |
taacaaattg |
37583275 |
T |
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