View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9473_low_1 (Length: 895)
Name: NF9473_low_1
Description: NF9473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9473_low_1 |
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| [»] scaffold0481 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 13 - 367
Target Start/End: Original strand, 405246 - 405589
Alignment:
| Q |
13 |
tttggtgttagacatgtattagaatgtgtaaggtgtaatcactgttgatgctcaatttagatttttgatgtatactcaaaagcaaaatgaacacacacgg |
112 |
Q |
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| T |
405246 |
tttggtgttcgacatgtattagaatgtgtaaggtgtaatcactgttgatgctcaatttagatttttgatgtatactcaa--gcaaaatgaacacacacgg |
405343 |
T |
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| Q |
113 |
tatatactatatactgtatagattggatttgtnnnnnnnnn--tgcttagggggatggatttgtcatgatagtttctatcccctgactgttgattgacta |
210 |
Q |
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| T |
405344 |
tatatactatatactgtatagattggatttgtaaaaaaaaaaatgcttaggggggtggatttgtaatgatagtttctatcccctgattgttgattgacta |
405443 |
T |
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| Q |
211 |
aatagattttggattggattcttaatttgatgaataataatgccaagttgccaatgatcaaagtatccattcccaagtttattaccttcatgctcttta- |
309 |
Q |
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| T |
405444 |
aatagattttggattggtttcttaatttgatgaataataatgccaagttgccaatgatgaaagtatccattcccaagtttattaccttcatgctctttat |
405543 |
T |
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| Q |
310 |
ttttgtggatccccttaatagttaattccagctgcttgtattgtaatgatatgtttgt |
367 |
Q |
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| T |
405544 |
ttttgtgga------------ttaattccagcttcttgtattgtaatgatatgtttgt |
405589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 555 - 618
Target Start/End: Original strand, 405674 - 405737
Alignment:
| Q |
555 |
aaaattttggaacaactcttccttttaagcatgagctaaacgtttgcatccatgtgcagtagca |
618 |
Q |
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| T |
405674 |
aaaatgttgaaacaactcttccttttaagcatgagctaaacgtttgcatccatgtgcagtagca |
405737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 239 - 361
Target Start/End: Original strand, 403748 - 403866
Alignment:
| Q |
239 |
gatgaataataatgccaagttgccaatgatcaaagtatccattcccaagtttattaccttcatgctctttattttgtggatccccttaatagttaattcc |
338 |
Q |
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| T |
403748 |
gatgaataataatgccaagttgttaatgatcaaagtattcattcccaagtttcttaatttgatgctctttcttct----agtcccttaatatttaattcc |
403843 |
T |
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| Q |
339 |
agctgcttgtattgtaatgatat |
361 |
Q |
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| T |
403844 |
acctgcttgtattgtaatgatat |
403866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0481 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0481
Description:
Target: scaffold0481; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 658 - 691
Target Start/End: Complemental strand, 8917 - 8884
Alignment:
| Q |
658 |
ctgcttgacttgatcacattcacacaagtttagt |
691 |
Q |
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| T |
8917 |
ctgcttgacttgatcacattcacacaagtttagt |
8884 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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