View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9473_low_12 (Length: 271)

Name: NF9473_low_12
Description: NF9473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9473_low_12
NF9473_low_12
[»] chr7 (5 HSPs)
chr7 (149-229)||(9382263-9382343)
chr7 (153-229)||(9399737-9399812)
chr7 (17-67)||(9382090-9382140)
chr7 (14-56)||(9399575-9399617)
chr7 (92-125)||(9382171-9382204)


Alignment Details
Target: chr7 (Bit Score: 73; Significance: 2e-33; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 149 - 229
Target Start/End: Original strand, 9382263 - 9382343
Alignment:
Q  149 aaagatacgacttttacataaaaagaaagaagtagggataaatttaattaccataatcaaggccttgatgtgaaccctttg 229  Q
    |||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9382263 aaagatgcgacttttacataaaaagaaggaagtagggataaatttaattaccataatcaaggccttgatgtgaaccctttg 9382343  T

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Target: chr7; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 153 - 229
Target Start/End: Original strand, 9399737 - 9399812
Alignment:
Q  153 atacgacttttacataaaaagaaagaagtagggataaatttaattaccataatcaaggccttgatgtgaaccctttg 229  Q
    ||||||||| ||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  9399737 atacgacttgtacataaaa-gaaagaagtagagataaatttaattaccataatcaaggccttgatgtgaaccctttg 9399812  T

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Target: chr7; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 17 - 67
Target Start/End: Original strand, 9382090 - 9382140
Alignment:
Q  17 aagggaatatttgttaatcaaatccgtaccaattaagtttgctaaaactgg 67  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  9382090 aagggaatatttgttattcaaatccgtaccaattaagtttgctaaaactgg 9382140  T

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Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 14 - 56
Target Start/End: Original strand, 9399575 - 9399617
Alignment:
Q  14 tcaaagggaatatttgttaatcaaatccgtaccaattaagttt 56  Q
    ||||||||||||||||||| |||||||||||||||||||||||    
T  9399575 tcaaagggaatatttgttattcaaatccgtaccaattaagttt 9399617  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 92 - 125
Target Start/End: Original strand, 9382171 - 9382204
Alignment:
Q  92 tgataacccacttgggttgatatgatgatattag 125  Q
    ||||||||||||||||||||||||||||||||||    
T  9382171 tgataacccacttgggttgatatgatgatattag 9382204  T

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