View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9473_low_13 (Length: 256)

Name: NF9473_low_13
Description: NF9473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9473_low_13
NF9473_low_13
[»] chr1 (2 HSPs)
chr1 (1-79)||(28536959-28537037)
chr1 (1-73)||(35686864-35686936)
[»] chr6 (1 HSPs)
chr6 (2-79)||(7723059-7723136)


Alignment Details
Target: chr1 (Bit Score: 67; Significance: 7e-30; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 28536959 - 28537037
Alignment:
Q  1 gtatggaatataaatagaggatcaaagacataaatgcttccgtaaacatattgcatttgtattttccataacttcatct 79  Q
    ||||||||| ||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  28536959 gtatggaatgtaaatagaggatcaaagacataaatgcttccttgaacatattgcatttgtattttccataacttcatct 28537037  T

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Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 35686864 - 35686936
Alignment:
Q  1 gtatggaatataaatagaggatcaaagacataaatgcttccgtaaacatattgcatttgtattttccataact 73  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||    
T  35686864 gtatggaatataaatagaggatcaaagacataaatgcttccttaaacgtattgcatttgtattttccataact 35686936  T

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Target: chr6 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 2 - 79
Target Start/End: Original strand, 7723059 - 7723136
Alignment:
Q  2 tatggaatataaatagaggatcaaagacataaatgcttccgtaaacatattgcatttgtattttccataacttcatct 79  Q
    ||||||||||||||| ||||||||||||||||||| |||| |||||||||||||||  |||||||||| |||||||||    
T  7723059 tatggaatataaatataggatcaaagacataaatgtttccttaaacatattgcattcatattttccatcacttcatct 7723136  T

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