View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9473_low_15 (Length: 234)
Name: NF9473_low_15
Description: NF9473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9473_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 157; Significance: 1e-83; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 19 - 196
Target Start/End: Original strand, 23178647 - 23178824
Alignment:
| Q |
19 |
actttactgtttcttgaagttgttcttcattccgtataaagtcacattctattaatatgatatagaatggcttcagtcttgaaatcattttatccttgct |
118 |
Q |
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| T |
23178647 |
actttactgtttcttgaagttgttcttcattccgtataaagtcacattctattaatatgatatagaatggcttcagtcttgaaatcattttatccttgct |
23178746 |
T |
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| Q |
119 |
caagaagcttgcattattgattttgtgtcattcattacaagtcatttaattctttannnnnnngagagaatgtcattt |
196 |
Q |
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| T |
23178747 |
caagaagcttgcattattgattttgtgtcattcattacaagtcatttaattctttatttttttgagagaatgtcattt |
23178824 |
T |
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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 182 - 228
Target Start/End: Original strand, 23178962 - 23179008
Alignment:
| Q |
182 |
gagagaatgtcatttaattcttggcctttttgacctatgcttctcct |
228 |
Q |
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| T |
23178962 |
gagagaatgtcatttaattcttggcctttttgacttatacttctcct |
23179008 |
T |
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