View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9473_low_3 (Length: 458)
Name: NF9473_low_3
Description: NF9473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9473_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 20 - 325
Target Start/End: Complemental strand, 29487461 - 29487156
Alignment:
| Q |
20 |
ccgaacacctttcttaccgcgtttctattgtgtaattaaaaaatgttatatattttgttctttgtttcacttcaggttttaaattttaaagtatgcaatg |
119 |
Q |
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| T |
29487461 |
ccgaacacctttcttaccgcgtttctattgtgtaattaaaaaatgttatatattttgttctttgtttcacttcaggttttaaattttaaagtatgcaatg |
29487362 |
T |
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| Q |
120 |
gttcacttttgcaaatcaagaagagcatgtcgtgattcgaagaaactgctgctctttctttctgcaataaaaaatacattaaacttttgttttgagtcca |
219 |
Q |
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| T |
29487361 |
gttcacttttgcaaaacaagaagagcatgtcgtgattcgaagaaactgctgctctttctttctacaataaaaaatacattaaacttttgttttgagtcca |
29487262 |
T |
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| Q |
220 |
ggaattttaaagaatgcaatgattcacttttgctctttcttacagtgtttcattctgttttgtaatataaaaaatacattaaactcttgagtggggagaa |
319 |
Q |
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| T |
29487261 |
ggaattttaaagaatgcaatgattcacttttgctctttcttacagtgtttcattctgttttgtaatataaaaaatacattaaactcttgagtggggagaa |
29487162 |
T |
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| Q |
320 |
cttttg |
325 |
Q |
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|||||| |
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| T |
29487161 |
cttttg |
29487156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 390 - 443
Target Start/End: Complemental strand, 29487079 - 29487026
Alignment:
| Q |
390 |
aaaaacatttgttgcttgacctgactattttaaggttattttgtttcttcatcc |
443 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29487079 |
aaaaacatttgttgcttgacctgactattttaaggttattttgtttcttcatcc |
29487026 |
T |
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