View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9473_low_7 (Length: 355)
Name: NF9473_low_7
Description: NF9473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9473_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 18 - 236
Target Start/End: Complemental strand, 15262788 - 15262570
Alignment:
| Q |
18 |
tcagcttcataagcaagtgaattaacagcatcttcacgttggtgagggtgtaaatcattgagaagctttgtaacattacttgctccaaaaattctatgaa |
117 |
Q |
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| T |
15262788 |
tcagcttcataagcaagtgaattcacagcatcttcacgttggtgagggtgtaaatcattgagaagctttgtaacattgcttgctccaaaaattctatgaa |
15262689 |
T |
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| Q |
118 |
catttgcaaatttttgtggctgatcaggtggaaaataaggtgcaaatgcacattctggttgacattttcggcgtagaaacttgcatgctgcacatggtga |
217 |
Q |
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| T |
15262688 |
catttgcaaatttttgtggctgatcaggtggaaaataaggtgcaaatgcacattctggttggcattttcggcgtagaaacttgcatgctgcacatggtga |
15262589 |
T |
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| Q |
218 |
atttgaggatgccatggta |
236 |
Q |
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| T |
15262588 |
atttgaggatgccatggta |
15262570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 21 - 163
Target Start/End: Complemental strand, 43583393 - 43583251
Alignment:
| Q |
21 |
gcttcataagcaagtgaattaacagcatcttcacgttggtgagggtgtaaatcattgagaagctttgtaacattacttgctccaaaaattctatgaacat |
120 |
Q |
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| T |
43583393 |
gcttcataagcaagggagttcacagcatcctccctttggtgagggagaagttcattgagaagctttgtgacattgctagcaccaaatattttgtgcacgt |
43583294 |
T |
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| Q |
121 |
ttgcaaatttttgtggctgatcaggtggaaaataaggtgcaaa |
163 |
Q |
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| T |
43583293 |
ttgcaaatttttgaggctcttctggagggaagtaaggtgcaaa |
43583251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 88 - 224
Target Start/End: Complemental strand, 591254 - 591118
Alignment:
| Q |
88 |
taacattacttgctccaaaaattctatgaacatttgcaaatttttgtggctgatcaggtggaaaataaggtgcaaa--tgcacattctggttgacatttt |
185 |
Q |
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| T |
591254 |
taacattacttgcaccaaatattttgtgaacatttgcaaacttatgaggctcttctggtgggaaataaggtgcaaaaatgca-atcttggttg-catttt |
591157 |
T |
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| Q |
186 |
cggcgtagaaacttgcatgctgcacatggtgaatttgag |
224 |
Q |
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| T |
591156 |
cttcttagaaacttgcaagcagcacatggagaatttgag |
591118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 192 - 223
Target Start/End: Complemental strand, 19282025 - 19281994
Alignment:
| Q |
192 |
agaaacttgcatgctgcacatggtgaatttga |
223 |
Q |
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| T |
19282025 |
agaaacttgcatgctgcacatggtgaatttga |
19281994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 136
Target Start/End: Original strand, 12360698 - 12360816
Alignment:
| Q |
18 |
tcagcttcataagcaagtgaattaacagcatcttcacgttggtgagggtgtaaatcattgagaagctttgtaacattacttgctccaaaaattctatgaa |
117 |
Q |
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||||||||||||||||| || || || |||||||| | ||| || || || | ||||| ||||| || | ||||| ||||| ||||| ||| | |||| |
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| T |
12360698 |
tcagcttcataagcaagagagttcactgcatcttccctttgatgtggttgcacttcattcagaagtttacttacattgcttgcaccaaatattttgtgaa |
12360797 |
T |
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| Q |
118 |
catttgcaaatttttgtgg |
136 |
Q |
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||||||||||||||||||| |
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| T |
12360798 |
catttgcaaatttttgtgg |
12360816 |
T |
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