View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9474_low_3 (Length: 250)
Name: NF9474_low_3
Description: NF9474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9474_low_3 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 8 - 250
Target Start/End: Complemental strand, 4189038 - 4188796
Alignment:
| Q |
8 |
ttggtggtggtttggctgggcttatctatggcaatgtgttcatgcacactgaacatgcacctctttccagtgacttttgattttattgaattattaactt |
107 |
Q |
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| T |
4189038 |
ttggtggtggtttggctgggcttatctatggcaatgtgttcatgcacactgaacatgcacctctttccagtgacttttgattttattgaattattaactt |
4188939 |
T |
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| Q |
108 |
attgttattggctatgttatgtatgtgattcttgttctgggataatgaaaaagaggaaaagcaactcttgtttttctcttctttgtttttagtttgattg |
207 |
Q |
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| T |
4188938 |
attgttattggctatgttatgtatgtgattcttgttctgggataatgaaaaagaggaaaagcaactcttgtttttctcttctttgtttttagtttgattg |
4188839 |
T |
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| Q |
208 |
taaagttgtttaagagtaaatcattgtttggtaagaattcaaa |
250 |
Q |
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| T |
4188838 |
taaagttgtttaagagtaaatcattgtttggtaagaattcaaa |
4188796 |
T |
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