View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9474_low_5 (Length: 240)
Name: NF9474_low_5
Description: NF9474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9474_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 4188590 - 4188368
Alignment:
| Q |
1 |
tttggcataaataaagcagatagaaattnnnnnnngggaatgctaatcattagttgtattgttaatcataccaactacatagatcaattgagactttatc |
100 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4188590 |
tttggcataaataaagcagatagaaattaaaaaaagggaatgctaatcattagttgtattgttaatcataccaactacatagatcaattgagactttatg |
4188491 |
T |
|
| Q |
101 |
tttgtcgtgattgtataaaaggtgttagtatggccctacaattatcaattattaatcttaaaatacaaacttccgaacaataccagccagggaaaaccat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
4188490 |
tttgtcgtgattgtataaaaggtgttagtatggccctacaattatcaattattaatcttaaaatacaaacttccgaacaatacaagccagggaaaaccat |
4188391 |
T |
|
| Q |
201 |
ttcagattcatgtcctttgaaaa |
223 |
Q |
| |
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||||||||||||||||||||||| |
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|
| T |
4188390 |
ttcagattcatgtcctttgaaaa |
4188368 |
T |
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