View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9475_low_1 (Length: 605)
Name: NF9475_low_1
Description: NF9475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9475_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 572; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 572; E-Value: 0
Query Start/End: Original strand, 11 - 594
Target Start/End: Original strand, 11902965 - 11903548
Alignment:
| Q |
11 |
gtttggtgttggttgaagttgaagttggcccacgaatttgttggaataacaattgagattcatgtctgttaagccctttcaaaacatacctggcaacaga |
110 |
Q |
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||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11902965 |
gtttgttgttggttgaggttgaagtttgcccacgaatttgttggaataacaattgagattcatgtctgttaagccctttcaaaacatacctggcaacaga |
11903064 |
T |
|
| Q |
111 |
aatattatcggcgacatagttgctacgtgtagtgatgagtattgcccaactggtaccgccagattcagttaatttcttttgcaacttttcaagatcatgc |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11903065 |
aatattatcggcgacatagttgctacgtgtagtgatgagtattgcccaactggtaccgccagattcagttaatttcttttgcaacttttcaagatcatgc |
11903164 |
T |
|
| Q |
211 |
ttaatctcaattcgcaaatcatcgagcacaagtaggcggcgtacacttccatcaatgactgtggtcatagctaagttagcaatgtattccacatcaaagg |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11903165 |
ttaatctcaattcgcaaatcatcgagcacaagtaggcggcgtacacttccatcaatgactgtggtcatagctaagttagcaatgtattccacatcaaagg |
11903264 |
T |
|
| Q |
311 |
tttcatggagagaacggatccaaattggttcgaaaccaaaatgagctttgacttgttcatcttcgcaaacaagacttgcaagttttgttttcccaattcc |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11903265 |
tttcatggagagaacggatccaaattggttcgaaaccaaaatgagctttgacttgttcatcttcgcaaacaagacttgcaagttttgttttcccaattcc |
11903364 |
T |
|
| Q |
411 |
aggaacaccaacaatgacaataacaggaacgaaatcatcagcagggttgttcaacttcagtagttgatctataatctccttcttttcattttctctgcca |
510 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11903365 |
aggaacaccaacaatgacaataacaggaacgaaatcatcagcagggttgttcaacttcagtagttgatctataatctccttcttttcattttctctgcca |
11903464 |
T |
|
| Q |
511 |
accatggtaattttctcaaaatttcttttgacattcttcatgttactattaactgtttctgttgctgcttctgctgcttcttga |
594 |
Q |
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| T |
11903465 |
accatggtaattttctcaaaatttcttttgacattcttcatgttactattaactgtttctgttgctgcttctgctgcttcttga |
11903548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 129 - 503
Target Start/End: Complemental strand, 11731119 - 11730745
Alignment:
| Q |
129 |
gttgctacgtgtagtgatgagtattgcccaactggtaccgccagattcagttaatttcttttgcaacttttcaagatcatgcttaatctcaattcgcaaa |
228 |
Q |
| |
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||||||||||||||||||||||||||| |||| |||||| | ||| || ||||| | |||||||| || ||||||| |||||||||| ||| |||| |
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| T |
11731119 |
gttgctacgtgtagtgatgagtattgcacaaccggtaccacaagactcctttaatcgttgctgcaacttctcgagatcattcttaatctcatttctcaaa |
11731020 |
T |
|
| Q |
229 |
tcatcgagcacaagtaggcggcgtacacttccatcaatgactgtggtcatagctaagttagcaatgtattccacatcaaaggtttcatggagagaacgga |
328 |
Q |
| |
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||||| ||||| | ||||| | || || |||||| | ||||| ||||| | ||| | ||| |||||||||||||||| || || ||| | || |
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| T |
11731019 |
tcatcaagcacgattaggcagtgtttaccatcatcaa---cagtggtggtagctgacttaactatggattccacatcaaaggtctcgtgtagaagatcga |
11730923 |
T |
|
| Q |
329 |
tccaaattggttcgaaaccaaaatgagctttgacttgttcatcttcgcaaacaagacttgcaagttttgttttcccaattccaggaacaccaacaatgac |
428 |
Q |
| |
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|||||||||||| | ||||||| ||||||||||| ||||| ||||||||||| | |||||||||||| ||||| ||||| ||||||||||||||||| |
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| T |
11730922 |
tccaaattggttgtagcccaaaatttgctttgacttgctcatcctcgcaaacaagccgtgcaagttttgtcttccctattcccggaacaccaacaatgac |
11730823 |
T |
|
| Q |
429 |
aataacaggaac---gaaatcatcagcagggttgttcaacttcagtagttgatctataatctccttcttttcattttc |
503 |
Q |
| |
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|| |||| ||| |||||||||| || |||||||| || ||||||||||||| || ||| ||||| || ||||| |
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| T |
11730822 |
aaaaacaccaacatgaaaatcatcagtagaattgttcaagttaagtagttgatctacaagctctttcttctctttttc |
11730745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 346 - 530
Target Start/End: Complemental strand, 11730461 - 11730274
Alignment:
| Q |
346 |
ccaaaatgagctttgacttgttcatcttcgcaaacaagacttgcaagttttgttttcccaattccaggaacaccaacaatgacaataacaggaac---ga |
442 |
Q |
| |
|
||||||| ||||||||||| ||||| | ||||||||||| |||||||||||| || || ||||| | ||||||||||||||||| |||| ||| | |
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| T |
11730461 |
ccaaaatttgctttgacttgctcatccttgcaaacaagacgtgcaagttttgtctttcctattcctgaaacaccaacaatgacaaaaacaccaacatgaa |
11730362 |
T |
|
| Q |
443 |
aatcatcagcagggttgttcaacttcagtagttgatctataatctccttcttttcattttctctgccaaccatggtaattttctcaaa |
530 |
Q |
| |
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|| |||||| || ||| || |||| |||||| ||||||||||||| ||||| |||| |||||| ||||||| |||| ||||||||| |
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| T |
11730361 |
aagcatcagtagatttgatccacttaagtagtcgatctataatctctttcttctcatattctcttccaaccacagtaactttctcaaa |
11730274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 327 - 425
Target Start/End: Complemental strand, 11859234 - 11859136
Alignment:
| Q |
327 |
gatccaaattggttcgaaaccaaaatgagctttgacttgttcatcttcgcaaacaagacttgcaagttttgttttcccaattccaggaacaccaacaat |
425 |
Q |
| |
|
||||||||||| || ||||||| || |||||||||| |||||||| ||||| |||| |||||||||||||| ||||||||||||||||||||||| |
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| T |
11859234 |
gatccaaattgcttggaaaccagaactccctttgacttgctcatcttcacaaacgagacgagcaagttttgttttgccaattccaggaacaccaacaat |
11859136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 327 - 435
Target Start/End: Complemental strand, 12038032 - 12037924
Alignment:
| Q |
327 |
gatccaaattggttcgaaaccaaaatgagctttgacttgttcatcttcgcaaacaagacttgcaagttttgttttcccaattccaggaacaccaacaatg |
426 |
Q |
| |
|
|||||||||||||| || ||||||| || |||||| ||||| || ||||| ||| |||||||||||||| ||||||||||||||||||||||| |
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| T |
12038032 |
gatccaaattggttgtaacccaaaattcatttcgacttgctcatcctcacaaacgagatgagcaagttttgttttgccaattccaggaacaccaacaata |
12037933 |
T |
|
| Q |
427 |
acaataaca |
435 |
Q |
| |
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||||||||| |
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| T |
12037932 |
acaataaca |
12037924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 332 - 425
Target Start/End: Complemental strand, 11827061 - 11826968
Alignment:
| Q |
332 |
aaattggttcgaaaccaaaatgagctttgacttgttcatcttcgcaaacaagacttgcaagttttgttttcccaattccaggaacaccaacaat |
425 |
Q |
| |
|
||||| ||||||| |||||| ||||||||||| || || || ||||| ||| ||||||||||||||||||||||||| |||||||||||| |
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| T |
11827061 |
aaatttgttcgaattcaaaattcgctttgacttgctcgtcctcacaaacgagatgagcaagttttgttttcccaattccagtaacaccaacaat |
11826968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 457 - 512
Target Start/End: Complemental strand, 11859104 - 11859049
Alignment:
| Q |
457 |
ttgttcaacttcagtagttgatctataatctccttcttttcattttctctgccaac |
512 |
Q |
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||||||| |||||| |||| |||||||||||||||||| || ||||||||||||| |
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| T |
11859104 |
ttgttcatcttcagcagtttatctataatctccttcttctctctttctctgccaac |
11859049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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