View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9475_low_2 (Length: 587)
Name: NF9475_low_2
Description: NF9475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9475_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 507; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 507; E-Value: 0
Query Start/End: Original strand, 16 - 579
Target Start/End: Complemental strand, 40556961 - 40556398
Alignment:
| Q |
16 |
ttctcttcttgcacctggttcttgcgtttctttgacggtttgcttgatcgttcattcttgtcttttcttttcttgatctcctttttggaaccttcattgg |
115 |
Q |
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| T |
40556961 |
ttctcttcttgcacctggttcttgcgtttctttgacggtttgcttgatcgttcattcttgtcttttcttttcttgatctcctttttggaaccttcattgg |
40556862 |
T |
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| Q |
116 |
atgaagatccctcatgagctccctcattattctttgtatcaggattgccaaaagcaattctcacccgtggtccatcacttcttcttgtcttgataagttt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40556861 |
atgaagatccctcatgagctccctcattattctttgtatcaggattgccaaaagcaattctcacccgtggtccatcacttcttcttgtcttgataagttt |
40556762 |
T |
|
| Q |
216 |
tttcccaacaccctcatcgcgtctacaatcagcaaccccgcgattctttgattcaagcataccatatttaagactgctaaaatctcttgtcgctgattgg |
315 |
Q |
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| T |
40556761 |
tttcccaacaccctcatcgcgtctacaatcagtaaccccgcgattctttgattcaagcataccatatttaagaatgctaaaatctcttgtcgctgattgg |
40556662 |
T |
|
| Q |
316 |
ttccttcnnnnnnncttggttattattttgtcaaaaccttcattgcatccacaaacaacgtcctcatgattcttctttgatcgcttacttcttttttcct |
415 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |
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| T |
40556661 |
ttccttctttttttcttggttattattttgtcaaaaccttcattgcatccacaaacaacatcctcatgattcttctttgatcggttacttcttttttcct |
40556562 |
T |
|
| Q |
416 |
tcactgtaactttcttaaaatcatcgttgcattccgaatcagcagcatagtactcctggttatttgaccgaagaatatgagaaacatcatctttgaattg |
515 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||||| |
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| T |
40556561 |
tcactgtaactttcttaaaatcatcgttgcattccgaatcagcagcatagtactcccggttatttgaccgaagaatataagaaacatcatttttgaattg |
40556462 |
T |
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| Q |
516 |
attagctaagaacttagatcgcaaacataataaattttccatcatccgataatcatcaccacca |
579 |
Q |
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|||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| |
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| T |
40556461 |
attagctaagaacttagatcgcaaacttagtaaattttccatcatccgataatcatcaccacca |
40556398 |
T |
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