View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9475_low_3 (Length: 541)
Name: NF9475_low_3
Description: NF9475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9475_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 15 - 526
Target Start/End: Complemental strand, 55162217 - 55161697
Alignment:
| Q |
15 |
cagagagacaaaactataattagattcttctatatatcttttaatatataccttacctatgagacaccaaatt-----gtttttaatttgaagtgtgagt |
109 |
Q |
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| T |
55162217 |
cagagagacaaaactataattagattcttctatatatcttttaatatatacct-----atgagacaccaaattaaattgtttttaatttgaagtgtgagt |
55162123 |
T |
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| Q |
110 |
gctgaagtgaagattagcttggactgactcacagtgttgatgatatattgttggttgattctccattggtgatgagtaaatggctgcagtgattgacttg |
209 |
Q |
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| T |
55162122 |
gctgaagtgaagattagcttggactgactcacagtgttgatgatatattgttggttgattctccattggtgctgagtaaatggctgcaatgattgacttg |
55162023 |
T |
|
| Q |
210 |
ctatatctatatccacatcttttccatctgagttatgaaagaagatggtagatgaatttgaaggagaattgagaagaaatccacctttgagaaatgacca |
309 |
Q |
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| T |
55162022 |
ctatatctatatccacatcttttccatctgagttatgaaagaagatggtagatgaatttgaaggagaattgagaagaaatccacctttgagaaatgacca |
55161923 |
T |
|
| Q |
310 |
acatccacgtttggccaaaactgtcccaatacagttatatgtctcattttctgtttctagctttgcctttatcataactgaatctgaatcttcaaccttc |
409 |
Q |
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| T |
55161922 |
acatccacgtttggccaaaactgtcccaatacagttatatgtctcattttctgtttctagctttgcctttatcataactgaatctgaatattcaaccttc |
55161823 |
T |
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| Q |
410 |
acccatactnnnnnnnnnnnnnnnnnnactttactaac-caaaacaaaaggg----tgtgtagagtttaat-------ggaaggaaggagcgtaaacgta |
497 |
Q |
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| T |
55161822 |
acccatact---gtagtagtagtagtaactttactaacaaaaaacaaaagggtgcatgcgtagagtttaatggaagaaggaaggaaggagcgtaaacgta |
55161726 |
T |
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| Q |
498 |
ccagaaaaagaatagatagtgtcgtaagt |
526 |
Q |
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| T |
55161725 |
ccagaaaaagaatagatagtgtcgtaagt |
55161697 |
T |
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