View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9475_low_6 (Length: 352)
Name: NF9475_low_6
Description: NF9475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9475_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 11 - 278
Target Start/End: Complemental strand, 17107007 - 17106731
Alignment:
| Q |
11 |
acatcataaaaacgtaccaatgagtacagaaacatgcattatgagaaaggttctaaaagcaaatgaaattgaacacacatacgtacgaacacat------ |
104 |
Q |
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| T |
17107007 |
acataataaaaacgtacgaatgagtacagaaacatgcattatgagaaaggttctaaaagcaaatgaaattgaacacacatacgtaagaacacattgagat |
17106908 |
T |
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| Q |
105 |
gcatcaagccttgatgatgttataacattacaagatgacaagatcataaccagatgaaatgttaactcggcaaatgactccttcagcctgtgtaaccatc |
204 |
Q |
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| T |
17106907 |
gcatcaagccttgatgatgttataacattacaagatgacaagatcataacaagatgaaatgttaactcggc-aatgactcatgcagcctgtgtaaccatc |
17106809 |
T |
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| Q |
205 |
tctcgggcaagtta----taaatcaagaaaatagtgtctttgcgaacacattaatcactgtcaaatttaaaattctca |
278 |
Q |
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| T |
17106808 |
tctcgggcaagttaaagttaaatcaagaaaatagtgtgtttgcgaacacattaatcactgtcaaatttaaaattctca |
17106731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 274 - 340
Target Start/End: Complemental strand, 17106711 - 17106645
Alignment:
| Q |
274 |
tctcaataaattcaaaacaaacaattatagtagataagatattcatcttctctatccctcaaactct |
340 |
Q |
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| T |
17106711 |
tctcaataaattcaaaacaaacaattatagtagataagatattcatattttctatacatcaaactct |
17106645 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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