View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9475_low_8 (Length: 317)
Name: NF9475_low_8
Description: NF9475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9475_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 15 - 308
Target Start/End: Complemental strand, 47128678 - 47128385
Alignment:
| Q |
15 |
agagaccttattccttatgagatttttagagaacttgttaggaatgatggtgagaaattcctcagattccctgtgcctgacgtgatcaaaggtatatata |
114 |
Q |
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| T |
47128678 |
agagaccttattccttatgagatttttagagaacttgttaggaatgatggtgagaaattcctcagattccctgtgcctgacgtgatcaaaggtatatata |
47128579 |
T |
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| Q |
115 |
gcattttaaccttcctttaataaaatggaatcattgatatgatttttgtttcattaattaattaatattggatataattgtagctagtaagactgcatgg |
214 |
Q |
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| T |
47128578 |
gcattttaaccttcctttaataaaatggaatcattgatatgatttttgtttcattaattaattagtattggaaataattgtagctagtaagactgcatgg |
47128479 |
T |
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| Q |
215 |
aggactgatgaggagtttggaagagaaatgcttgctggggttaaccctgttatcattcgccgtctccaagtaccactacataatactccctctg |
308 |
Q |
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| T |
47128478 |
aggactgatgaggagtttggaagagaaatgcttgctggggttaaccctgttatcattcgccgtctccaagtaccactacataatactccctctg |
47128385 |
T |
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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 252
Target Start/End: Original strand, 42688087 - 42688139
Alignment:
| Q |
200 |
agtaagactgcatggaggactgatgaggagtttggaagagaaatgcttgctgg |
252 |
Q |
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| T |
42688087 |
agtaagtctgcatggatgacagatgaagagtttgcaagagaaatgcttgctgg |
42688139 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 202 - 252
Target Start/End: Original strand, 36744657 - 36744707
Alignment:
| Q |
202 |
taagactgcatggaggactgatgaggagtttggaagagaaatgcttgctgg |
252 |
Q |
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| T |
36744657 |
taagtctgcatggatgactgatgaagaatttgcaagagaaatgcttgctgg |
36744707 |
T |
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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 200 - 252
Target Start/End: Complemental strand, 6263858 - 6263806
Alignment:
| Q |
200 |
agtaagactgcatggaggactgatgaggagtttggaagagaaatgcttgctgg |
252 |
Q |
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|||||| ||||||||| ||||||||| || ||||||||||| || |||||||| |
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| T |
6263858 |
agtaagtctgcatggatgactgatgatgaatttggaagagagattcttgctgg |
6263806 |
T |
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