View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9476_high_3 (Length: 237)
Name: NF9476_high_3
Description: NF9476
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9476_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 45509024 - 45508802
Alignment:
| Q |
1 |
ccatatactgatatgatttttcccaattccctcagtcatagatctaaaataagtatggctaagggctaaggcaaagtcaataatgcaaatgcaagagatg |
100 |
Q |
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| T |
45509024 |
ccatatactgatatgatttttcccaattccctcagtcatagatctaaaatgcgtatggctaagggctaaggcaaagtcaataatgcaaatgcaagagatg |
45508925 |
T |
|
| Q |
101 |
agttgggcttgttctaaaaatagattgattaacgaaccccacatagttgtttgcttccagcacgcttaagacaaagagagaaagagtgaactgtgaaggg |
200 |
Q |
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|||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45508924 |
agttgggcttgtgctaaaaatagactgattaacgaaccccacatagttgtttgcttccagcacgcttaagacaaagagagaaagagtgaactgtgaaggg |
45508825 |
T |
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| Q |
201 |
aactttgccaccttccaaatgat |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
45508824 |
aactttgccaccttccaaatgat |
45508802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 4 - 223
Target Start/End: Original strand, 19845381 - 19845607
Alignment:
| Q |
4 |
tatactgatatgatttttcccaattccctcagtcatagatctaaaataagtatggct-------aagggctaaggcaaagtcaataatgcaaatgcaaga |
96 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
19845381 |
tatactgatatgatttttaccaattccctcagtcatagatctaaaatgcgtatggctaagggctaagggctaaggcaaagtcaataatgcaaatgcaaga |
19845480 |
T |
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| Q |
97 |
gatgagttgggcttgttctaaaaatagattgattaacgaaccccacatagttgtttgcttccagcacgcttaagacaaagagagaaagagtgaactgtga |
196 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19845481 |
gatgagttgggcttgtgctaaaaatagattgattaacgaaccccacatagttgtttgcttccagcacgcttaagacaaagagagaaagagtgaactgtga |
19845580 |
T |
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| Q |
197 |
agggaactttgccaccttccaaatgat |
223 |
Q |
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||||||||||||||||||||||||||| |
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| T |
19845581 |
agggaactttgccaccttccaaatgat |
19845607 |
T |
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