View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9476_high_4 (Length: 227)
Name: NF9476_high_4
Description: NF9476
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9476_high_4 |
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| [»] chr3 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 45509353 - 45509124
Alignment:
| Q |
1 |
aaagttgaaaaaatagaggtgaaagaacttctctttccatttatttggttnnnnnnnngtgggaagagaaatttaattattttgaaaatgatatatagaa |
100 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
45509353 |
aaagttgaaaaaatagaggcgaaagaacttctctttccatttatttggttaaaaaaaagtgggaagagaaatttaattattttgaaaatgatatatagaa |
45509254 |
T |
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| Q |
101 |
ttttactccgatgagaagtttcatccctaagctgcttaactcacaaatataatttatctctc---ttctatatttcttgtggactctcccatttttacaa |
197 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
45509253 |
ttttactccaatgagaagtttcatccctaagctgcttaactcacaaatataatttatctctcttcttctatatttcttgtggactctcccatttttacaa |
45509154 |
T |
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| Q |
198 |
ttttaaatgcataaaattaatattataatc |
227 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
45509153 |
ttttaaatgcataaaattaatattataatc |
45509124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 159; Significance: 8e-85; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 19845063 - 19845288
Alignment:
| Q |
1 |
aaagttgaaaaaatagaggtgaaagaacttctctttccatttatttggttnnnnnnnn-gtgggaagagaaatttaattattttgaaaatgatatataga |
99 |
Q |
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|||||||||||||| |||| ||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
19845063 |
aaagttgaaaaaatggaggcgaaggaacttctctttccatttatttggttaaaaaaaaagtgggaagagaaatttaattattttgaaaatgatatataga |
19845162 |
T |
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| Q |
100 |
attttactccgatgagaagtttcatccctaagctgcttaactcacaaatataatttatctctcttctatatttcttgt-ggactctcccatttttacaat |
198 |
Q |
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| T |
19845163 |
attttactccaatgagaagtttcatccctaagctgcttaactcacaaatataatttatct---ttctatatttcttgtgggactctcccatttttacaat |
19845259 |
T |
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| Q |
199 |
tttaaatgcataaaattaatattataatc |
227 |
Q |
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| T |
19845260 |
tttaaatgcataaaattaatattataatc |
19845288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 219
Target Start/End: Original strand, 40946560 - 40946645
Alignment:
| Q |
135 |
cttaactcacaaatataatttatctctcttctatatttcttgtggactctcccatttttacaatttt-aaatgcataaaattaata |
219 |
Q |
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|||||| |||| |||| |||| ||||||||| ||||||| ||| || |||||||||| ||| |||| ||||||||||||| |||| |
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| T |
40946560 |
cttaacccacatatatcatttttctctcttccatatttcatgttcacactcccattttaacactttttaaatgcataaaatcaata |
40946645 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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