View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9476_low_1 (Length: 668)

Name: NF9476_low_1
Description: NF9476
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9476_low_1
NF9476_low_1
[»] chr4 (1 HSPs)
chr4 (14-658)||(3174882-3175527)


Alignment Details
Target: chr4 (Bit Score: 488; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 14 - 658
Target Start/End: Original strand, 3174882 - 3175527
Alignment:
Q  14 cttttttctgtgaatggacatattgagtacctagccaattaagggtgtcacttttaattgaaaatacatagttgtcctattgatacaaatgtaagtgtaa 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  3174882 cttttttctgtgaatggacatattgagtacctagccaattaagggt--cacttttaattgaaaatacatagttgtcctattgatgcaaatgtaagtgtaa 3174979  T
Q  114 tgtattacctatatttccattnnnnnnngcttaggaatcatattccaactatttatcaannnnnnnnatgattctgtcaatgattggacatattgaatag 213  Q
    |||||||||||||||||||||        ||||||||||||||||||||||||||||||        |||||||||||| ||||||||||||||||||||    
T  3174980 tgtattacctatatttccattaaaaaaaacttaggaatcatattccaactatttatcaattttttttatgattctgtca-tgattggacatattgaatag 3175078  T
Q  214 ttagtcaattaagggtcactttta----aatgaaaatacatatttgtcccattgatgcaaatgtaagtgtaatttaattaattataattacatacataaa 309  Q
    ||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  3175079 ttagtcaattaagggtcacttttatttaaatgaaaatacatatttgtcccattgatgcaaatgtaagtgtaatttaattaattataattacatacatata 3175178  T
Q  310 tgtccattaannnnnnnnnnnnnnnnnnnngttgcagtggtcatggcaaaccattttactaggattcagtttcctagcctttctgttgataacaagacac 409  Q
    ||||||||||                    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3175179 tgtccattaatttttttaacatttttttttgttgcagtggtcatggcaaaccattttactaggattcagtttcctagcctttctgttgataacaagacac 3175278  T
Q  410 attgtaagatttttcatcttgcaatttggataataaaatatacaaatatttcaatttcatttgcttcttaatatatgaaaaattcttacatatggtttta 509  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  3175279 attgtaagatttttcatcttgcaatttgcataataaaatatacaaatatttcaatttcatctgcttcttaatatatgaaaaattcttacatatggtttta 3175378  T
Q  510 aattgtgatagagcttgaagaggccaaaattattctggatttcagcagctgcaccattgacttcagttattctatcaaccattttagtcttttcaatgag 609  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3175379 aattgtgatagagcttgaagaggccaaaattattctggatttcagcagctgcaccattgacttcagttattctatcaaccattttagtcttttcaatgag 3175478  T
Q  610 acataagatcaataaaatagcaattgtaagaaaagacactctacctttg 658  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  3175479 acataagatcaataaaatagcaattgtaagaaaagacactctacctttg 3175527  T

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