View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9476_low_18 (Length: 208)
Name: NF9476_low_18
Description: NF9476
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9476_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 158; Significance: 3e-84; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 14 - 191
Target Start/End: Complemental strand, 7188 - 7011
Alignment:
| Q |
14 |
cataggtgaggcaaatataacagatcttcaaacatcttaacaccttctgagaagggattctttgcagcctccgaagtttcgactctatcgcctactcaga |
113 |
Q |
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| T |
7188 |
cataggtgaggcaaatataacagatcttcaaacatcttaacaccttctgagaagggactcgtggcagcctccgaagtttcgactctatcgcctactcaga |
7089 |
T |
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| Q |
114 |
acatgagtctttggtgaagtgtagcaggtacacattcgctggtatgtatccactctttgttgaggatgatagagtatg |
191 |
Q |
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| T |
7088 |
acatgagtctttggtgaagtgtagcagctacacattcactggtatgtatccactctttgttgaggatgatagagtatg |
7011 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 14 - 191
Target Start/End: Complemental strand, 15593 - 15415
Alignment:
| Q |
14 |
cataggtgaggcaaatataacagatcttcaaacatcttaacaccttctgagaagggattctttgcagcctccgaagtttcgactctatcgcctactcaga |
113 |
Q |
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| T |
15593 |
cataggtgaggcaaatagaacagagcttcaaaaatcttaaaaccttttgagaagggactcttggcagcctccaaagtttcgcctttatcgcctactcaaa |
15494 |
T |
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| Q |
114 |
acatgagtctttggtgaagtgtagcaggt--acacattcgctggtatgtatccactctttgttgaggatgatagagtatg |
191 |
Q |
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| T |
15493 |
acacgagtctctggtgaagtgtagaaggtagacacattcaccggtatgtattcaat-ttttttgaggaggatagagtatg |
15415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 164
Target Start/End: Complemental strand, 27446021 - 27445947
Alignment:
| Q |
90 |
tttcgactctatcgcctactcagaacatgagtctttggtgaagtgtagcaggtacacattcgctggtatgtatcc |
164 |
Q |
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| T |
27446021 |
tttcaactttatcgtctactcaacacgtgagcttttggtgaagtgtagaagttacacattcactggtatgtatcc |
27445947 |
T |
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