View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9476_low_2 (Length: 627)
Name: NF9476_low_2
Description: NF9476
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9476_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 522; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 522; E-Value: 0
Query Start/End: Original strand, 47 - 606
Target Start/End: Complemental strand, 42942190 - 42941634
Alignment:
| Q |
47 |
ggttgaaggtgatatagcccttgagccagcaagataccatttcttaatagtctctactacattggcattctctattacatactttgagtcttcttttcct |
146 |
Q |
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| T |
42942190 |
ggttgaaggtgatatagcccttgagccagcaagataccatttcttaatagtctctactacattggcattctctattacatactttgagtcttcttttcct |
42942091 |
T |
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| Q |
147 |
tccaaagataccactatctgtattacaacaaacaatcatcacattagtcaacttaaatgcaatatttgttaatgttagttgaagttggttatgtcatcta |
246 |
Q |
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| T |
42942090 |
tccaaagataccactatctgtattacaacaaacaatcatcacattagtcaacttaaatgcaatatttgttaatgttagttgaagttggttatgtcatcga |
42941991 |
T |
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| Q |
247 |
gatgtcaattcaattgttaagagtttgattttgtaaccagatgaaattcaaaactcatatgtagcagctgtaaatgacatgacgattaatgtcattgttg |
346 |
Q |
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| T |
42941990 |
gatgtcaattcaattgttaagagtttgattttgtaaccggatgaaattcaaaactcatatgtagcagttgtaaatgacatgacgattaatgtcattgttg |
42941891 |
T |
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| Q |
347 |
ttaataataagttgacctaaaatcaacctaaaatgaataggatcaattaaggtagccaatgcctaatgctgcttgctattattttacctcagcagttgga |
446 |
Q |
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| T |
42941890 |
ttaataataagttgacctaaaatcaacttaaaatgaataggatcaattaaggtagccagtgcctaatgctgcttgc---tactttacctcagcagttgga |
42941794 |
T |
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| Q |
447 |
gagtttgctgggaaatgatatgtgatgactgaatgtttcttgaagtacttagactggaaaaattcaattactttttccaaagcttcttcttcttcatcct |
546 |
Q |
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| T |
42941793 |
gagtttgctgggaaatgatatgtgatgactgaatgtttcttgaagtacttagactggaaaaattcaattactttttccaaagcttcttcttcttcatcct |
42941694 |
T |
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| Q |
547 |
catatttgtcatcggctgccaaacggtccctaacagcagtctcaatctgaacaccatact |
606 |
Q |
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| T |
42941693 |
catatttgtcatcggctgccaaacggtccctaacagcagtctcaatctgaacaccatact |
42941634 |
T |
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