View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9476_low_3 (Length: 436)
Name: NF9476_low_3
Description: NF9476
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9476_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 371; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 17 - 424
Target Start/End: Original strand, 34655004 - 34655415
Alignment:
| Q |
17 |
agtcttaggtacctcctaacatagttgagtgtgtcttgtgcaatcaaatctgccattgcaagaagatcaaatgcatatttcttgatccttaaaacacttc |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34655004 |
agtcttaggtacctcctaacatagttgagtgtgtcttgtgcaatcaaatccgccattgcaagaagatcaaatgcatatttcttgatccttaaaacacttc |
34655103 |
T |
|
| Q |
117 |
cttttgctccaatatttgccatgtagagtttcttcttaataaaagaacgcgtcccagttttctcatttgcaatatctaaccatataatcatcattcacat |
216 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34655104 |
cttttgctccaatatttgccatgtagagtttctttttaataaaagaacgcgtcccagttttctcatttgcaatatctaaccatataatcatcattcacat |
34655203 |
T |
|
| Q |
217 |
cgttagaacaagaaccttgattcaaaagtaaatagatacgaaaaacgcaaacaaagaaaacacaacattttatctcagggttcggccagttgtgtctacg |
316 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
34655204 |
cgttagaacaagaaccttgattcaaaagtaaacagatacgaaaaacgcaaacaaagaaaacacaacattttatctcagggctcggccagttgtgtctacg |
34655303 |
T |
|
| Q |
317 |
ttctctgactacattgatattc----tattattcaagcttaggattacttttacaaatttacttcaaatgttacggtccaatttacatgattactcctaa |
412 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |
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| T |
34655304 |
ttctctgactacattgatattctatatattattcaagcttaggattacttttacaaatttactttaaatgctacggtccaatttacatgattactcctaa |
34655403 |
T |
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| Q |
413 |
gccacttagtat |
424 |
Q |
| |
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|||||||||||| |
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| T |
34655404 |
gccacttagtat |
34655415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 274
Target Start/End: Complemental strand, 3101737 - 3101700
Alignment:
| Q |
237 |
ttcaaaagtaaatagatacgaaaaacgcaaacaaagaa |
274 |
Q |
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|||||||||||| |||||||| |||||||||||||||| |
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| T |
3101737 |
ttcaaaagtaaacagatacgataaacgcaaacaaagaa |
3101700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 218 - 281
Target Start/End: Complemental strand, 6263064 - 6263001
Alignment:
| Q |
218 |
gttagaacaagaaccttgattcaaaagtaaatagatacgaaaaacgcaaacaaagaaaacacaa |
281 |
Q |
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|||||||||| || | || |||||||| |||||||||||||||||||||||| |||| |||||| |
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| T |
6263064 |
gttagaacaacaatcctggttcaaaagaaaatagatacgaaaaacgcaaacagagaacacacaa |
6263001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 219 - 286
Target Start/End: Original strand, 33717198 - 33717265
Alignment:
| Q |
219 |
ttagaacaagaaccttgattcaaaagtaaatagatacgaaaaacgcaaacaaagaaaacacaacattt |
286 |
Q |
| |
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||||||||| |||| | |||||||||||| |||||||||||| ||||||| |||| |||||| |||| |
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| T |
33717198 |
ttagaacaacaaccctagttcaaaagtaaacagatacgaaaaatgcaaacagagaacacacaagattt |
33717265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 218 - 262
Target Start/End: Complemental strand, 5055928 - 5055884
Alignment:
| Q |
218 |
gttagaacaagaaccttgattcaaaagtaaatagatacgaaaaac |
262 |
Q |
| |
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|||||||||| |||| || |||||||||||| ||||||||||||| |
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| T |
5055928 |
gttagaacaacaaccctggttcaaaagtaaaaagatacgaaaaac |
5055884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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