View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9476_low_4 (Length: 322)
Name: NF9476_low_4
Description: NF9476
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9476_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 17 - 313
Target Start/End: Complemental strand, 32487751 - 32487445
Alignment:
| Q |
17 |
ataaagacatggaaacaatcattctacattataatatctctcatgtacaataagtatgacatcatcatgcattgctagtgaatctccaccaaccagttaa |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32487751 |
ataaagacatggaaacaatcattctacattataatatctctcgtgtacaataagtatgacatcatcatgcattgctagtgaatctccaccaaccagttaa |
32487652 |
T |
|
| Q |
117 |
gatttatacaaatcaacacaaacttctttatattgagaccattaatttaattttaccattttattgaatgaaaatgtagatctaatgctaattaag---- |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32487651 |
gatttatacaaatcaacacaaacttctttatattgagacgattaatttaattttaccattttattgaatgaaaatgtagatctaatgctaattaagcagt |
32487552 |
T |
|
| Q |
213 |
------tagtcatcatataataataagtagctttcaaattttaaacttcatgaaacctacgaagaccaaccgaaaaggcaacatgaagtgtcaaatccaa |
306 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32487551 |
cactcataatcatcatataataataagtagctttcaaattttaaacttcatgaaacctacgaagaccaaccgaaaaggcaacatgaagtgtcaaatccaa |
32487452 |
T |
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| Q |
307 |
gaataat |
313 |
Q |
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||||||| |
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| T |
32487451 |
gaataat |
32487445 |
T |
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