View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9476_low_6 (Length: 263)
Name: NF9476_low_6
Description: NF9476
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9476_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 14)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 7 - 236
Target Start/End: Original strand, 4841878 - 4842107
Alignment:
| Q |
7 |
agccattttaagaagtgatattattattgtgttggtgcataagacataggaagttaactggctttatactaattagagactcaaagtgagtttatggtca |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||| | | |||||||| |||||||||||||||||||||| ||||||||||||||| |
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|
| T |
4841878 |
agccattttaagaagtgatattattattgtgttggtgcataatacatatggaattaactggttttatactaattagagactcaatgtgagtttatggtca |
4841977 |
T |
|
| Q |
107 |
atctaagtcgtttactaaatgtcaaaattatgtatgaattgaattattcaacaatgttacaacttccatgtatttgctactagttgatgatcactaacta |
206 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
4841978 |
atctaagttatttactaaatgtcaaaattatgtatgaattgaattattcaacaatgttacaacttccatgtatttgctactagttgatgatcattaacta |
4842077 |
T |
|
| Q |
207 |
tccttaatttcattttccatacatcaagac |
236 |
Q |
| |
|
||||||||||||||||||||||| |||||| |
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|
| T |
4842078 |
tccttaatttcattttccatacagcaagac |
4842107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 7 - 198
Target Start/End: Original strand, 4835192 - 4835384
Alignment:
| Q |
7 |
agccattttaagaagtgatattattatt-gtgttggtgcataagacataggaagttaactggctttatactaattagagactcaaagtgagtttatggtc |
105 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||| ||||| | |||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
4835192 |
agccattttaagaagtgatattattattagtgttggtgcataatacatatggagttaactggttttatactaattagagactcaaagtgagtttatggtc |
4835291 |
T |
|
| Q |
106 |
aatctaagtcgtttactaaatgtcaaaattatgtatgaattgaattattcaacaatgttacaacttccatgtatttgctactagttgatgatc |
198 |
Q |
| |
|
|||| ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| |
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| T |
4835292 |
aatcaaagtcatttactaaatgtcaaaattgtgtatgaattgaattattcaacaatgttacaaggtccatgtatttgctactacttgatgatc |
4835384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 2 - 196
Target Start/End: Original strand, 4852521 - 4852716
Alignment:
| Q |
2 |
gaataagccattttaagaagtgatattattatt-gtgttggtgcataagacataggaagttaactggctttatactaattagagactcaaagtgagttta |
100 |
Q |
| |
|
|||| ||||||||||||||||||||| |||||| |||||||||||||| ||||| | ||| ||||| ||||||||| |||||||||||| ||||||||| |
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|
| T |
4852521 |
gaattagccattttaagaagtgatataattattagtgttggtgcataatacatatggagtatactggttttatactagttagagactcaatgtgagttta |
4852620 |
T |
|
| Q |
101 |
tggtcaatctaagtcgtttactaaatgtcaaaattatgtatgaattgaattattcaacaatgttacaacttccatgtatttgctactagttgatga |
196 |
Q |
| |
|
||||| ||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |||| |
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|
| T |
4852621 |
tggtcgatctaagtcatttactaaatgtcaaaattgtgtatgaattgaattattcaacaatgttacaagttccatgtagttgctactagtttatga |
4852716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 2 - 199
Target Start/End: Original strand, 4856492 - 4856694
Alignment:
| Q |
2 |
gaataagccattttaagaagtgatattattatt-gtgttggtgcataagacataggaagttaactggctttatactaattagagactcaaagtgagttta |
100 |
Q |
| |
|
|||| ||||||||||||||||||||| |||||| |||||||||||||| ||||| | ||| ||||| ||||||||| |||||||||||| ||||||||| |
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|
| T |
4856492 |
gaattagccattttaagaagtgatataattattagtgttggtgcataatacatatggagtatactggttttatactagttagagactcaatgtgagttta |
4856591 |
T |
|
| Q |
101 |
tggtcaatctaagtcgtttactaaatgtcaaaattatgtatgaattgaattattcaacaatgttaca----acttccatgtatttgctactagttgatga |
196 |
Q |
| |
|
||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
4856592 |
tggtcaatctaagtcatgtactaaatgtcaaaattgtgtatgaattgaattattcaacaatgttacatgttccttccatgtatttgctactagttgatga |
4856691 |
T |
|
| Q |
197 |
tca |
199 |
Q |
| |
|
||| |
|
|
| T |
4856692 |
tca |
4856694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 2 - 199
Target Start/End: Original strand, 4878227 - 4878429
Alignment:
| Q |
2 |
gaataagccattttaagaagtgatattattatt-gtgttggtgcataagacataggaagttaactggctttatactaattagagactcaaagtgagttta |
100 |
Q |
| |
|
|||| ||||||||||||||||||||| |||||| |||||||||||||| ||||| | ||| ||||| ||||||||| |||||||||||| ||||||||| |
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|
| T |
4878227 |
gaattagccattttaagaagtgatataattattagtgttggtgcataatacatatggagtatactggttttatactagttagagactcaatgtgagttta |
4878326 |
T |
|
| Q |
101 |
tggtcaatctaagtcgtttactaaatgtcaaaattatgtatgaattgaattattcaacaatgttaca----acttccatgtatttgctactagttgatga |
196 |
Q |
| |
|
||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
4878327 |
tggtcaatctaagtcatgtactaaatgtcaaaattgtgtatgaattgaattattcaacaatgttacatgttccttccatgtatttgctactagttgatga |
4878426 |
T |
|
| Q |
197 |
tca |
199 |
Q |
| |
|
||| |
|
|
| T |
4878427 |
tca |
4878429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 94 - 229
Target Start/End: Original strand, 4868569 - 4868700
Alignment:
| Q |
94 |
gagtttatggtcaatctaagtcgtttactaaatgtcaaaattatgtatgaattgaattattcaacaatgttacaacttccatgtatttgctactagttga |
193 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
4868569 |
gagtttatggtcaatctaagtcatttactaaatgtcaaaattatgtatgaattgaattattcaacaatgttacaagctccatgtatttgctactagttga |
4868668 |
T |
|
| Q |
194 |
tgatcactaactatccttaatttcattttccataca |
229 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| |
|
|
| T |
4868669 |
tgatcactaactatcc----tttcattttccataca |
4868700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 94 - 229
Target Start/End: Original strand, 4842873 - 4843004
Alignment:
| Q |
94 |
gagtttatggtcaatctaagtcgtttactaaatgtcaaaattatgtatgaattgaattattcaacaatgttacaacttccatgtatttgctactagttga |
193 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
4842873 |
gagtttatggtcaatctaagtcatttactaaatgtcaaaattgtgtatgaattgaattattcaacaatgttacaagctccatgtatttgctactagttga |
4842972 |
T |
|
| Q |
194 |
tgatcactaactatccttaatttcattttccataca |
229 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| |
|
|
| T |
4842973 |
tgatcactaactatcc----tttcattttccataca |
4843004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 4871572 - 4871686
Alignment:
| Q |
1 |
ggaataagccattttaagaagtgatattattattgtgttggtgcataagacataggaagttaactggctttatactaattagagactcaaagtgagttta |
100 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||| |||||||||||| ||||||||| |
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|
| T |
4871572 |
ggaattagccattttaagaagtgatattattattgtgttggtgcataatacatatggagttaactggctttatactagttagagactcaatgtgagttta |
4871671 |
T |
|
| Q |
101 |
tggtcaatctaagtc |
115 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
4871672 |
tggtcaatctaagtc |
4871686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 4845813 - 4845927
Alignment:
| Q |
1 |
ggaataagccattttaagaagtgatattattattgtgttggtgcataagacataggaagttaactggctttatactaattagagactcaaagtgagttta |
100 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| |||||||||||| |||| ||| |
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|
| T |
4845813 |
ggaattagccattttaagaagtgatattattattgtgttggtgcataatacataggtagttaactggctttatactagttagagactcaatgtgattttt |
4845912 |
T |
|
| Q |
101 |
tggtcaatctaagtc |
115 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
4845913 |
tggtcaatctaagtc |
4845927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 4826444 - 4826570
Alignment:
| Q |
1 |
ggaataagccattttaagaagtgatattattatt-gtgttggtgcataagacataggaagttaactggctttatactaattagagactcaaagtgagttt |
99 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||| |||||||||||||| |||||| |||||||||| ||||||||| |||||||||||| |||||||| |
|
|
| T |
4826444 |
ggaattagccactttaagaagtgatattattattagtgttggtgcataatacatagagagttaactggttttatactagttagagactcaatgtgagttt |
4826543 |
T |
|
| Q |
100 |
atggtcaatctaagtcgtttactaaat |
126 |
Q |
| |
|
|||||||||||||||| |||||||||| |
|
|
| T |
4826544 |
atggtcaatctaagtcatttactaaat |
4826570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 7 - 199
Target Start/End: Original strand, 4860795 - 4860975
Alignment:
| Q |
7 |
agccattttaagaagtgatattattatt-gtgttggtgcataagacataggaagttaa-ctggctttatactaattagagactcaaagtgagtttatggt |
104 |
Q |
| |
|
||||||||||||||||||||| |||||| |||||||||||||| ||||||| |||||| |||| ||||||||| |||||||||||| |||||| ||| || |
|
|
| T |
4860795 |
agccattttaagaagtgatataattattagtgttggtgcataatacatagggagttaaactggttttatactagttagagactcaatgtgagtctatcgt |
4860894 |
T |
|
| Q |
105 |
caatctaagtcgtttactaaatgtcaaaattatgtatgaattgaattattcaacaatgttacaacttccatgtatttgctactagttgatgatca |
199 |
Q |
| |
|
||||| || || |||||| || | ||||||||||||||||||||||||||| ||||||||||||| |||||| ||||||||| |
|
|
| T |
4860895 |
caatc--------------aaagttaaaattgtgcacgaattgaattattcaacaatgttacaagttccatgtatttgatactagctgatgatca |
4860975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 7 - 199
Target Start/End: Original strand, 4880802 - 4880982
Alignment:
| Q |
7 |
agccattttaagaagtgatattattatt-gtgttggtgcataagacataggaagttaa-ctggctttatactaattagagactcaaagtgagtttatggt |
104 |
Q |
| |
|
||||||||||||||||||||| |||||| |||||||||||||| ||||||| |||||| |||| ||||||||| |||||||||||| |||||| ||| || |
|
|
| T |
4880802 |
agccattttaagaagtgatataattattagtgttggtgcataatacatagggagttaaactggttttatactagttagagactcaatgtgagtctatcgt |
4880901 |
T |
|
| Q |
105 |
caatctaagtcgtttactaaatgtcaaaattatgtatgaattgaattattcaacaatgttacaacttccatgtatttgctactagttgatgatca |
199 |
Q |
| |
|
||||| || || |||||| || | ||||||||||||||||||||||||||| ||||||||||||| |||||| ||||||||| |
|
|
| T |
4880902 |
caatc--------------aaagttaaaattgtgcacgaattgaattattcaacaatgttacaagttccatgtatttgatactagctgatgatca |
4880982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 139 - 197
Target Start/End: Original strand, 4846025 - 4846083
Alignment:
| Q |
139 |
tatgaattgaattattcaacaatgttacaacttccatgtatttgctactagttgatgat |
197 |
Q |
| |
|
|||||||||||||||| |||||||||||| |||||||||||||| ||||||||||||| |
|
|
| T |
4846025 |
tatgaattgaattattgaacaatgttacatgttccatgtatttgcaactagttgatgat |
4846083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 86 - 126
Target Start/End: Original strand, 4837426 - 4837466
Alignment:
| Q |
86 |
ctcaaagtgagtttatggtcaatctaagtcgtttactaaat |
126 |
Q |
| |
|
||||| ||||||||||||||||| |||||| |||||||||| |
|
|
| T |
4837426 |
ctcaatgtgagtttatggtcaatataagtcatttactaaat |
4837466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 2 - 90
Target Start/End: Complemental strand, 21703845 - 21703756
Alignment:
| Q |
2 |
gaataagccattttaagaagtgatattattatt-gtgttggtgcataagacataggaagttaactggctttatactaattagagactcaa |
90 |
Q |
| |
|
|||| ||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| || ||||||||| |||||||||||| |
|
|
| T |
21703845 |
gaattagccattttaagaagtgatattaatattagtgttggtgcataagacataggaagttaaccggttttatactagttagagactcaa |
21703756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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