View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9477_high_16 (Length: 212)

Name: NF9477_high_16
Description: NF9477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9477_high_16
NF9477_high_16
[»] chr7 (1 HSPs)
chr7 (19-195)||(26707108-26707284)
[»] chr5 (13 HSPs)
chr5 (19-185)||(29853085-29853251)
chr5 (69-187)||(30677381-30677499)
chr5 (69-180)||(30242585-30242696)
chr5 (69-187)||(29871958-29872076)
chr5 (72-191)||(30060137-30060256)
chr5 (30-182)||(30206302-30206460)
chr5 (69-180)||(30749422-30749533)
chr5 (77-195)||(30483168-30483286)
chr5 (77-186)||(30713643-30713752)
chr5 (77-180)||(30435601-30435704)
chr5 (77-180)||(30338746-30338849)
chr5 (72-189)||(30399847-30399964)
chr5 (19-173)||(17418317-17418477)
[»] chr3 (1 HSPs)
chr3 (69-180)||(25294082-25294193)
[»] chr4 (1 HSPs)
chr4 (69-195)||(20296804-20296930)


Alignment Details
Target: chr7 (Bit Score: 129; Significance: 6e-67; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 19 - 195
Target Start/End: Complemental strand, 26707284 - 26707108
Alignment:
Q  19 cacttgccattaaaccgttctcttcgggttttatgcatatcccaggtattatcactagggagtttaattcatttaaggtatttggaacttcgttctcttg 118  Q
    ||||| ||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||    
T  26707284 cacttcccattaaaccgctctcttcgggttttatgcacatcccaggtattatcactagggagcttaattcatttaaggtatttggaacttcgttatcttg 26707185  T
Q  119 acataaaaaagttgcctgactcaatttacaacctaaaaaagctggaaatcttgaaaataaaagactgtggtaatctg 195  Q
    | ||||||||||| ||| |||||||||||||| ||||||| ||||||||||||||||||||||| |||| |||||||    
T  26707184 atataaaaaagtttcctaactcaatttacaacttaaaaaaactggaaatcttgaaaataaaagattgtgataatctg 26707108  T

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Target: chr5 (Bit Score: 123; Significance: 2e-63; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 19 - 185
Target Start/End: Complemental strand, 29853251 - 29853085
Alignment:
Q  19 cacttgccattaaaccgttctcttcgggttttatgcatatcccaggtattatcactagggagtttaattcatttaaggtatttggaacttcgttctcttg 118  Q
    ||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  29853251 cacttcccattaaaccgctctcttcgggttttatgcatatcccatgtattatcactagaaagtttaattcatttaaggtatttggaacttcgttctcttg 29853152  T
Q  119 acataaaaaagttgcctgactcaatttacaacctaaaaaagctggaaatcttgaaaataaaagactg 185  Q
    ||||||||| |||||| ||||||||||||||| || |||| |||||||| |||||||||||||||||    
T  29853151 acataaaaatgttgccggactcaatttacaacttacaaaaactggaaatattgaaaataaaagactg 29853085  T

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Target: chr5; HSP #2
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 69 - 187
Target Start/End: Original strand, 30677381 - 30677499
Alignment:
Q  69 atcactagggagtttaattcatttaaggtatttggaacttcgttctcttgacataaaaaagttgcctgactcaatttacaacctaaaaaagctggaaatc 168  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||    
T  30677381 atcactagggagtttaattcatttaaggtatttggaacttcgttctcttgacataaatatgttgcctgactcaatttacaacctaaaaaagctggaaatc 30677480  T
Q  169 ttgaaaataaaagactgtg 187  Q
    |||||||||||| ||||||    
T  30677481 ttgaaaataaaacactgtg 30677499  T

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Target: chr5; HSP #3
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 69 - 180
Target Start/End: Original strand, 30242585 - 30242696
Alignment:
Q  69 atcactagggagtttaattcatttaaggtatttggaacttcgttctcttgacataaaaaagttgcctgactcaatttacaacctaaaaaagctggaaatc 168  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||    
T  30242585 atcactagggagtttaattcatttaaggtatttggaacttcgttctcttgacatcaaaaatttgcctgactcaatttacaacctaaaaaagctggaaatc 30242684  T
Q  169 ttgaaaataaaa 180  Q
    ||||||||||||    
T  30242685 ttgaaaataaaa 30242696  T

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Target: chr5; HSP #4
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 69 - 187
Target Start/End: Complemental strand, 29872076 - 29871958
Alignment:
Q  69 atcactagggagtttaattcatttaaggtatttggaacttcgttctcttgacataaaaaagttgcctgactcaatttacaacctaaaaaagctggaaatc 168  Q
    |||||| |||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  29872076 atcactggggagtttaattcatttaaggtatttgggacttcgttttcttgacataaaaaagttgcctgactcaatttacaatctaaaaaagctggaaatc 29871977  T
Q  169 ttgaaaataaaagactgtg 187  Q
    |||||||||||| ||||||    
T  29871976 ttgaaaataaaatactgtg 29871958  T

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Target: chr5; HSP #5
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 72 - 191
Target Start/End: Complemental strand, 30060256 - 30060137
Alignment:
Q  72 actagggagtttaattcatttaaggtatttggaacttcgttctcttgacataaaaaagttgcctgactcaatttacaacctaaaaaagctggaaatcttg 171  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || |||| ||||||||||||    
T  30060256 actaggtagtttaattcatttaaggtatttggaacttcgttctcttgatataaaaaagttgcctgactcaatttacaacttacaaaaactggaaatcttg 30060157  T
Q  172 aaaataaaagactgtggtaa 191  Q
    ||||||||||||||| ||||    
T  30060156 aaaataaaagactgtcgtaa 30060137  T

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Target: chr5; HSP #6
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 30 - 182
Target Start/End: Complemental strand, 30206460 - 30206302
Alignment:
Q  30 aaaccgttctcttcgggttttatgcatatcc------caggtattatcactagggagtttaattcatttaaggtatttggaacttcgttctcttgacata 123  Q
    ||||||||| |||||||||||||||| ||||      ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  30206460 aaaccgttcccttcgggttttatgcacatcctttatccaggtaccatcactagggagtttaattcatttaaggtatttggaacttcgttctcttgaaata 30206361  T
Q  124 aaaaagttgcctgactcaatttacaacctaaaaaagctggaaatcttgaaaataaaaga 182  Q
    |||| |||||| ||||||||||||||| || |||| |||||||||||||||||||||||    
T  30206360 aaaatgttgccggactcaatttacaacttacaaaaactggaaatcttgaaaataaaaga 30206302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 69 - 180
Target Start/End: Complemental strand, 30749533 - 30749422
Alignment:
Q  69 atcactagggagtttaattcatttaaggtatttggaacttcgttctcttgacataaaaaagttgcctgactcaatttacaacctaaaaaagctggaaatc 168  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| || |||| |||||||||    
T  30749533 atcactagggagtttaattcatttaaggtatttggaacttcgttctcttgatataaaaaagttgcctaactcaatttacaacttacaaaaactggaaatc 30749434  T
Q  169 ttgaaaataaaa 180  Q
    ||||||||||||    
T  30749433 ttgaaaataaaa 30749422  T

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Target: chr5; HSP #8
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 77 - 195
Target Start/End: Complemental strand, 30483286 - 30483168
Alignment:
Q  77 ggagtttaattcatttaaggtatttggaacttcgttctcttgacataaaaaagttgcctgactcaatttacaacctaaaaaagctggaaatcttgaaaat 176  Q
    ||||||||||||||||||||||||||||||||  || |||||||||| ||||||||||| |||||||||||||| || |||| |||||||||||||||||    
T  30483286 ggagtttaattcatttaaggtatttggaacttatttatcttgacatagaaaagttgcctaactcaatttacaacttacaaaaactggaaatcttgaaaat 30483187  T
Q  177 aaaagactgtggtaatctg 195  Q
    |||||||||| ||||||||    
T  30483186 aaaagactgtcgtaatctg 30483168  T

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Target: chr5; HSP #9
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 77 - 186
Target Start/End: Original strand, 30713643 - 30713752
Alignment:
Q  77 ggagtttaattcatttaaggtatttggaacttcgttctcttgacataaaaaagttgcctgactcaatttacaacctaaaaaagctggaaatcttgaaaat 176  Q
    ||||||||||||||||||||||||||||| ||| |||||||| ||||||||||||||||||||||||||||||| || |||| |||||||||||||||||    
T  30713643 ggagtttaattcatttaaggtatttggaaattcattctcttggcataaaaaagttgcctgactcaatttacaacttacaaaaactggaaatcttgaaaat 30713742  T
Q  177 aaaagactgt 186  Q
    |||| |||||    
T  30713743 aaaacactgt 30713752  T

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Target: chr5; HSP #10
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 77 - 180
Target Start/End: Complemental strand, 30435704 - 30435601
Alignment:
Q  77 ggagtttaattcatttaaggtatttggaacttcgttctcttgacataaaaaagttgcctgactcaatttacaacctaaaaaagctggaaatcttgaaaat 176  Q
    |||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |||||||||||||| || |||| |||||||||||||||||    
T  30435704 ggagtttaattcatttaaggtatttggaactttgttctcttgatataaaaaagttgcctaactcaatttacaacttacaaaaactggaaatcttgaaaat 30435605  T
Q  177 aaaa 180  Q
    ||||    
T  30435604 aaaa 30435601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 77 - 180
Target Start/End: Original strand, 30338746 - 30338849
Alignment:
Q  77 ggagtttaattcatttaaggtatttggaacttcgttctcttgacataaaaaagttgcctgactcaatttacaacctaaaaaagctggaaatcttgaaaat 176  Q
    ||||||||||||||||||||||||||||||||  || |||||||||| ||||||||||| |||||||||||||| || |||| |||||||||||||||||    
T  30338746 ggagtttaattcatttaaggtatttggaacttacttatcttgacatagaaaagttgcctaactcaatttacaacttacaaaaactggaaatcttgaaaat 30338845  T
Q  177 aaaa 180  Q
    ||||    
T  30338846 aaaa 30338849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 72 - 189
Target Start/End: Complemental strand, 30399964 - 30399847
Alignment:
Q  72 actagggagtttaattcatttaaggtatttggaacttcgttctcttgacataaaaaagttgcctgactcaatttacaacctaaaaaagctggaaatcttg 171  Q
    |||||| |||||||||||||||||||||||||| |||| || |||||||||| || ||||||||||||||||||||||| || |||| ||||||| ||||    
T  30399964 actaggtagtttaattcatttaaggtatttggagcttctttatcttgacatacaagagttgcctgactcaatttacaacttacaaaaactggaaaccttg 30399865  T
Q  172 aaaataaaagactgtggt 189  Q
    ||||||||| | ||||||    
T  30399864 aaaataaaacattgtggt 30399847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 19 - 173
Target Start/End: Original strand, 17418317 - 17418477
Alignment:
Q  19 cacttgccattaaaccgttctcttcgggttttatgcatatcc------caggtattatcactagggagtttaattcatttaaggtatttggaacttcgtt 112  Q
    |||||||||  ||||| |||||||||||||||||||| ||||      ||||||   ||||||| |||||||||||||||| ||||||| ||||||||||    
T  17418317 cacttgccaagaaaccattctcttcgggttttatgcacatcctctctccaggtaccctcactagagagtttaattcatttatggtatttagaacttcgtt 17418416  T
Q  113 ctcttgacataaaaaagttgcctgactcaatttacaacctaaaaaagctggaaatcttgaa 173  Q
    ||  | ||||||| |  || || |||| ||||| |||| || |||| || |||||||||||    
T  17418417 ctgcttacataaacattttaccggactgaatttgcaacttacaaaaactagaaatcttgaa 17418477  T

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Target: chr3 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 69 - 180
Target Start/End: Original strand, 25294082 - 25294193
Alignment:
Q  69 atcactagggagtttaattcatttaaggtatttggaacttcgttctcttgacataaaaaagttgcctgactcaatttacaacctaaaaaagctggaaatc 168  Q
    |||| |||| || |||||||||||||||||||||| ||||  ||||||||||||||||| |||| ||||||||||||||||| ||||||  |||||||||    
T  25294082 atcaataggaagcttaattcatttaaggtatttggcactttattctcttgacataaaaatgttgtctgactcaatttacaacttaaaaatactggaaatc 25294181  T
Q  169 ttgaaaataaaa 180  Q
    || |||||||||    
T  25294182 ttaaaaataaaa 25294193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 1e-27; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 69 - 195
Target Start/End: Original strand, 20296804 - 20296930
Alignment:
Q  69 atcactagggagtttaattcatttaaggtatttggaacttcgttctcttgacataaaaaagttgcctgactcaatttacaacctaaaaaagctggaaatc 168  Q
    |||||||| ||||||||||||||||||||||||||| ||||||  ||||| ||||||| ||||||||||||||||||||||| |  ||||  |||||| |    
T  20296804 atcactagagagtttaattcatttaaggtatttggagcttcgtaatcttgtcataaaagagttgcctgactcaatttacaacttgcaaaaattggaaacc 20296903  T
Q  169 ttgaaaataaaagactgtggtaatctg 195  Q
    |||||||||| |  ||||| |||||||    
T  20296904 ttgaaaataatacgctgtgataatctg 20296930  T

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