View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9477_high_3 (Length: 474)
Name: NF9477_high_3
Description: NF9477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9477_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 24 - 472
Target Start/End: Original strand, 42837865 - 42838329
Alignment:
| Q |
24 |
ctaagccgcctgaaagactcaaccgatctagcaagatgcagactcgtttcaaacaccctcaactccgcttcctccgaagttcgttcgttgaccctcatct |
123 |
Q |
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| T |
42837865 |
ctaagccgcctgaaagactcaaccgatctagcaagatgctgactcgtttcaaacacccgcaactccgcttcctccgaagttcgttcgttgactctcatct |
42837964 |
T |
|
| Q |
124 |
gttccatgtctcgttacctcaattcacgttcaccagaaaccaagcacctcatcacccctttcaaaatcgttttcaacaacctcgttctccgttcccccaa |
223 |
Q |
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| T |
42837965 |
gttccatgtctcgttacctcaattcacgttccccagaaaccaagcacctcatcacccctttcaaaatcgttttcaacaacctcgttctccgttcccccaa |
42838064 |
T |
|
| Q |
224 |
tctcgaatctgttaccatcggcgttgatcgttctcttgttgagatgccctttgacgattttgaagatgaatctgatgatcttcaccttacggattttaat |
323 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42838065 |
tctcgaatctgttaccatcggcgttgatcgttctcttgttgagatgccctttgacgattttgaagatgaatctgatgatcttcaccttacggattttaat |
42838164 |
T |
|
| Q |
324 |
----------------ttccttcgctttccaactccattaagtcgctgtctgtttctgatttctgggttcaatcttgttggagacgttcacgagctttgc |
407 |
Q |
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||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42838165 |
ttcattcaagattggcttccttcgctttccaactccattaattcgccgtctgtttctgatttctgggttcaatcttgttggagacgttcacgagctttgc |
42838264 |
T |
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| Q |
408 |
cccgcatctcttccacttgttagtcagcttcttagttctcaactcctttaattatttattgtcta |
472 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42838265 |
ccctcatctcttccacttgttagtcagcttcttagttctcaactcctttaattatttattgtcta |
42838329 |
T |
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