View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9477_high_4 (Length: 452)
Name: NF9477_high_4
Description: NF9477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9477_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 416; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 19 - 450
Target Start/End: Complemental strand, 45362522 - 45362091
Alignment:
| Q |
19 |
cctttcaaatcagaagcaccaaagttagaattacgactaccacccatcatggaatgtaaatctgtgtggttgaaactagaccctcttggagttggattcc |
118 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45362522 |
cctttcaaatcaaaagcaccaaagttagaattacgactaccacccatcatggaatgtaaatctgtgtggttgaaactagaccctcttggagttggattcc |
45362423 |
T |
|
| Q |
119 |
ttgatgattgcaaagagtatatctctgcattcgtcagatttgaagctcgaggtgttgtatgagactgagaatgagaccttcttgaagcatttgatctcct |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45362422 |
ttgatgattgcaaagagtatatctctgcattcgtcagatttgaagctcgaggtgttgtatgagactgagaatgagaccttcttgaagcatttgatctcct |
45362323 |
T |
|
| Q |
219 |
cactataacatgaagcttcccatcttctttgattacagcttctgtttccaaacactgtcttccatcatccaacgacatcacatcagagtcaacatgaatg |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45362322 |
cactataacatgaagcttcccatcttctttgattacagcttctgtttccaaacactgtcttccatcatccaacgacatcacatcagagtcaacatgaatg |
45362223 |
T |
|
| Q |
319 |
gaaacaatggtaccagcagtgtctggaaactgttctgagataagcgttcttgctcctctaaactcaaacatgaacaacatcaacgtgtaccaaataatac |
418 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
45362222 |
gaaacaatggtaccagcagtgtctggaaactgttctgagataagcattcttgctcctctaaactcaaacatgaacaaaatcaacgtgtaccaaataatac |
45362123 |
T |
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| Q |
419 |
actgaaggaccacaatttgtaccaccaaactc |
450 |
Q |
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| T |
45362122 |
actgaaggaccacaatttgtaccatcaaactc |
45362091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 198 - 442
Target Start/End: Complemental strand, 25039157 - 25038916
Alignment:
| Q |
198 |
tcttgaagcatttgatctcctcactataacatgaagcttcccatcttctttgattacagcttctgtttccaaacactgtcttccatcatccaacgacatc |
297 |
Q |
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|||||||||||||||| | || || | | |||||| || ||||||||||||||| |||| || |||||||| || ||| | ||||||| ||||| |
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| T |
25039157 |
tcttgaagcatttgattttctaacagtgatatgaagtttaccatcttctttgatttcagcatcagtttccaatg---gtgttctaccatccaatgacatg |
25039061 |
T |
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| Q |
298 |
acatcagagtcaacatgaatggaaacaatggtaccagcagtgtctggaaactgttctgagataagcgttcttgctcctctaaactcaaacatgaacaaca |
397 |
Q |
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|||||||| |||||||| || |||||||||| |||||||||||| ||||||||||| || || | | |||||||||||||||||||||||||| | || |
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| T |
25039060 |
acatcagaatcaacatggattgaaacaatggaaccagcagtgtcaggaaactgttcagaaatcaacaaccttgctcctctaaactcaaacatgaaaagca |
25038961 |
T |
|
| Q |
398 |
tcaacgtgtaccaaataatacactgaaggaccacaatttgtacca |
442 |
Q |
| |
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|||| || |||||||| ||||| ||||| || ||||||||||||| |
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| T |
25038960 |
tcaaagtataccaaatgatacattgaagaacaacaatttgtacca |
25038916 |
T |
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