View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9477_high_9 (Length: 344)
Name: NF9477_high_9
Description: NF9477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9477_high_9 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 42 - 332
Target Start/End: Complemental strand, 14540043 - 14539753
Alignment:
| Q |
42 |
gtggttgcgacctgatgaatgttcagtgcatgtttggattgacgatgatgttgtcaaaattacgatggactgacgtaattttggttaaagttacacctaa |
141 |
Q |
| |
|
|||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14540043 |
gtggttgcaacctaatgaatgttcagtgcatgtttggattgacgatgatgttgtcaaaattacgatggactgacgtaattttggttaaagttacacctaa |
14539944 |
T |
|
| Q |
142 |
gggatgtaagaaagacattgcagcatgatttcatcaaacttaccgtcaatccaaatatgcgcggaatatgtcaataaccacggttaccaatcaaataccg |
241 |
Q |
| |
|
||||||||||||||||||| | ||||||||| ||||||||||| |||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
14539943 |
gggatgtaagaaagacattaccgcatgattttatcaaacttacggtcaatccaaatttgcgcggaatatgtcaataaccatggttaccaatcaaataccg |
14539844 |
T |
|
| Q |
242 |
taccaaaaagtataaaatcacatgaacagtgttgataactgaattgtacgttgttttatgaattcaggttagactatgatgttgcagaatt |
332 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14539843 |
taccaaaaagtataaaatcacatgaacagtgttgatgattgaattgtacgttgttttatgaattcaggttagactatgatgttgcagaatt |
14539753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University