View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9477_low_1 (Length: 716)

Name: NF9477_low_1
Description: NF9477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9477_low_1
NF9477_low_1
[»] chr6 (3 HSPs)
chr6 (57-547)||(29258500-29258997)
chr6 (591-703)||(29259053-29259165)
chr6 (634-681)||(2356635-2356682)
[»] chr8 (2 HSPs)
chr8 (634-681)||(8341171-8341218)
chr8 (627-678)||(18808104-18808155)
[»] chr1 (1 HSPs)
chr1 (634-681)||(48660269-48660316)
[»] chr4 (5 HSPs)
chr4 (634-686)||(31984383-31984435)
chr4 (634-681)||(9607262-9607309)
chr4 (627-686)||(13189442-13189501)
chr4 (629-680)||(22315210-22315261)
chr4 (634-681)||(53685365-53685412)
[»] scaffold0060 (1 HSPs)
scaffold0060 (634-681)||(34719-34766)
[»] chr7 (1 HSPs)
chr7 (634-681)||(25859197-25859244)
[»] chr2 (3 HSPs)
chr2 (627-681)||(21190216-21190270)
chr2 (627-681)||(30176241-30176295)
chr2 (627-681)||(45155641-45155695)
[»] chr3 (3 HSPs)
chr3 (634-693)||(50482679-50482739)
chr3 (627-686)||(6935473-6935532)
chr3 (634-679)||(44003165-44003210)
[»] chr5 (1 HSPs)
chr5 (635-684)||(35192907-35192956)


Alignment Details
Target: chr6 (Bit Score: 423; Significance: 0; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 57 - 547
Target Start/End: Original strand, 29258500 - 29258997
Alignment:
Q  57 tgattgtcccaaaca-ataatttgtttcattttacgtgactttctttatcacaattacgagaaaacaatggacaatcattttggaattgaaggcggttgg 155  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29258500 tgattgtcccaaacacataatttgtttcattttacgtgactttctttatcacaattacgagaaaacaatggacaatcattttggaattgaaggcggttgg 29258599  T
Q  156 tggagacagaaagatatctaaatgaggtattgtgtgaaggggtaaataatgtgtcacaattataaggtgggtggacataaatatagaccagaaaatgaca 255  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  29258600 tggagacagaaagatatctaaatgaggtattgtgtgaaggggttaataatgtgtcacaattataaggtggatggacataaatatagaccagaaaatgaca 29258699  T
Q  256 agcacacatcaaactatcttaaactttgctttgtcttgtaggattcttaaggtgcattcatatgtgttttcacgttcatactatttcgtaagatcttaga 355  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29258700 agcacacatcaaactatcttaaactttgctttgtcttgtaggattcttaaggtgcattcatatgtgttttcacgttcatactatttcgtaagatcttaga 29258799  T
Q  356 ccatccacaacactgcttgctgatccatgattattcattcatagttttctaatattagaatctcacaaaattctttaaataggtcataataactctcttt 455  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29258800 ccatccacaacactgcttgctgatccatgattattcattcatagttttctaatattagaatctcacaaaattctttaaataggtcataataactctcttt 29258899  T
Q  456 tttgtatgc------aaaagagggcacagtctaagnnnnnnnnnnnnctactgagttaaacgaatattttgaggcatgaaaacgttgaatatgttgtc 547  Q
    |||||||||      ||||||||||||||||||||            |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29258900 tttgtatgcaaaagaaaaagagggcacagtctaagaaaaagaaaaaactactgagttaaacgaatattttgaggcatgaaaacgttgaatatgttgtc 29258997  T

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Target: chr6; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 591 - 703
Target Start/End: Original strand, 29259053 - 29259165
Alignment:
Q  591 agtatgagagagctatgatttagacattnnnnnnnttattttatattttattaggggcctatttttatatgagagccgggtctccaattacataggaatg 690  Q
    |||||||||||||| |||||||||||||       ||||||||||||||||||| || |||||||||||||||||| | ||||||||||||||||||| |    
T  29259053 agtatgagagagctttgatttagacattaaaaaaattattttatattttattagaggtctatttttatatgagagctgagtctccaattacataggaacg 29259152  T
Q  691 gccatgatgtcca 703  Q
     ||||||||||||    
T  29259153 accatgatgtcca 29259165  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 634 - 681
Target Start/End: Complemental strand, 2356682 - 2356635
Alignment:
Q  634 tattttattaggggcctatttttatatgagagccgggtctccaattac 681  Q
    ||||||||||||||||||||| ||||||||||||| | ||||||||||    
T  2356682 tattttattaggggcctatttatatatgagagccgagcctccaattac 2356635  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 634 - 681
Target Start/End: Complemental strand, 8341218 - 8341171
Alignment:
Q  634 tattttattaggggcctatttttatatgagagccgggtctccaattac 681  Q
    ||||||||||||||||||||||||||||||||||| | ||||||||||    
T  8341218 tattttattaggggcctatttttatatgagagccgagcctccaattac 8341171  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 627 - 678
Target Start/End: Complemental strand, 18808155 - 18808104
Alignment:
Q  627 tattttatattttattaggggcctatttttatatgagagccgggtctccaat 678  Q
    |||||| |||||||||||||||||||||| | |||||||||| | |||||||    
T  18808155 tattttttattttattaggggcctattttcacatgagagccgagcctccaat 18808104  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 634 - 681
Target Start/End: Original strand, 48660269 - 48660316
Alignment:
Q  634 tattttattaggggcctatttttatatgagagccgggtctccaattac 681  Q
    ||||||||||||||||||||||||||||||||||| | ||||||||||    
T  48660269 tattttattaggggcctatttttatatgagagccgagcctccaattac 48660316  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 634 - 686
Target Start/End: Complemental strand, 31984435 - 31984383
Alignment:
Q  634 tattttattaggggcctatttttatatgagagccgggtctccaattacatagg 686  Q
    |||||||||||||||||||||||| ||||||| |||| ||||| |||||||||    
T  31984435 tattttattaggggcctatttttacatgagagtcgggcctccagttacatagg 31984383  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 634 - 681
Target Start/End: Original strand, 9607262 - 9607309
Alignment:
Q  634 tattttattaggggcctatttttatatgagagccgggtctccaattac 681  Q
    ||||||||||||| ||||||||||||||||||||| | ||||||||||    
T  9607262 tattttattagggacctatttttatatgagagccgagcctccaattac 9607309  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 627 - 686
Target Start/End: Original strand, 13189442 - 13189501
Alignment:
Q  627 tattttatattttattaggggcctatttttatatgagagccgggtctccaattacatagg 686  Q
    |||||| ||||||| |||||||||||||||| |||||||||| | |||||||||| ||||    
T  13189442 tattttttattttagtaggggcctatttttacatgagagccgagcctccaattacctagg 13189501  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 629 - 680
Target Start/End: Complemental strand, 22315261 - 22315210
Alignment:
Q  629 ttttatattttattaggggcctatttttatatgagagccgggtctccaatta 680  Q
    |||| |||||| |||||||||| ||||||||||||||||| | |||||||||    
T  22315261 ttttttattttgttaggggcctttttttatatgagagccgagcctccaatta 22315210  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 634 - 681
Target Start/End: Complemental strand, 53685412 - 53685365
Alignment:
Q  634 tattttattaggggcctatttttatatgagagccgggtctccaattac 681  Q
    |||||||||||  |||||||||||||||||||||| | ||||||||||    
T  53685412 tattttattagatgcctatttttatatgagagccgagcctccaattac 53685365  T

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Target: scaffold0060 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 634 - 681
Target Start/End: Original strand, 34719 - 34766
Alignment:
Q  634 tattttattaggggcctatttttatatgagagccgggtctccaattac 681  Q
    |||||||||||| |||||||||||||||||||||| | ||||||||||    
T  34719 tattttattaggagcctatttttatatgagagccgagcctccaattac 34766  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 634 - 681
Target Start/End: Original strand, 25859197 - 25859244
Alignment:
Q  634 tattttattaggggcctatttttatatgagagccgggtctccaattac 681  Q
    |||||||||||||||||||||||||||||||| || | ||||||||||    
T  25859197 tattttattaggggcctatttttatatgagagtcgagcctccaattac 25859244  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 627 - 681
Target Start/End: Complemental strand, 21190270 - 21190216
Alignment:
Q  627 tattttatattttattaggggcctatttttatatgagagccgggtctccaattac 681  Q
    |||||| |||||||||||||||||||||| | |||||||||| | ||||||||||    
T  21190270 tattttttattttattaggggcctattttcacatgagagccgagcctccaattac 21190216  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 627 - 681
Target Start/End: Original strand, 30176241 - 30176295
Alignment:
Q  627 tattttatattttattaggggcctatttttatatgagagccgggtctccaattac 681  Q
    |||||| |||||||||||||||||||||| | |||||||||| | ||||||||||    
T  30176241 tattttttattttattaggggcctattttcacatgagagccgagcctccaattac 30176295  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 627 - 681
Target Start/End: Complemental strand, 45155695 - 45155641
Alignment:
Q  627 tattttatattttattaggggcctatttttatatgagagccgggtctccaattac 681  Q
    |||||| |||||||||| ||||||||||| | |||||||||| | ||||||||||    
T  45155695 tattttttattttattaagggcctattttcacatgagagccgagcctccaattac 45155641  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 634 - 693
Target Start/End: Complemental strand, 50482739 - 50482679
Alignment:
Q  634 tattttattagggg-cctatttttatatgagagccgggtctccaattacataggaatggcc 693  Q
    |||||||||||||| |||||||||| |||||||||| | |||||||||| |||||| ||||    
T  50482739 tattttattagggggcctatttttacatgagagccgagcctccaattacttaggaacggcc 50482679  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 627 - 686
Target Start/End: Complemental strand, 6935532 - 6935473
Alignment:
Q  627 tattttatattttattaggggcctatttttatatgagagccgggtctccaattacatagg 686  Q
    |||||| ||||||||||||||||||| |||| ||||||| || | |||||||||| ||||    
T  6935532 tattttttattttattaggggcctatatttacatgagagtcgagcctccaattacctagg 6935473  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 634 - 679
Target Start/End: Original strand, 44003165 - 44003210
Alignment:
Q  634 tattttattaggggcctatttttatatgagagccgggtctccaatt 679  Q
    ||||||||||||| ||||||||  | ||||||||||||||||||||    
T  44003165 tattttattagggacctattttattttgagagccgggtctccaatt 44003210  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 635 - 684
Target Start/End: Original strand, 35192907 - 35192956
Alignment:
Q  635 attttattaggggcctatttttatatgagagccgggtctccaattacata 684  Q
    ||||||||||||||||||||||| || |||| || | |||||||||||||    
T  35192907 attttattaggggcctatttttacatcagagtcgagcctccaattacata 35192956  T

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